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SAMN06704776
Cd_contaminated_sediment_9
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
31,647
Reads
1,003
Observed features
6.403
Shannon
0.927
Evenness
1,003
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.4, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435137
Per-run QC
- 16S identity
- 98.0%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.3%
- Archaea 1.7%
- Chloroflexota 30.9%
- Pseudomonadota 16.2%
- Acidobacteriota 14.2%
- Planctomycetota 5.6%
- Verrucomicrobiota 5.4%
- Bacteroidota 3.6%
- Thermodesulfobacteriota 3.1%
- everything else 21.0%
- Anaerolineae 26.4%
- Gammaproteobacteria 14.6%
- Vicinamibacteria 8.3%
- Verrucomicrobiia 4.5%
- Planctomycetes 3.9%
- KD4-96 3.7%
- Bacteroidia 3.6%
- everything else 35.1%
- Anaerolineales 22.4%
- Incertae Sedis 13.9%
- Burkholderiales 9.0%
- Vicinamibacterales 5.2%
- Pedosphaerales 3.4%
- Pirellulales 3.3%
- Subgroup 17 3.1%
- everything else 39.8%
- Incertae Sedis 29.6%
- Anaerolineaceae 22.4%
- Pedosphaeraceae 3.4%
- Pirellulaceae 3.3%
- Hydrogenophilaceae 2.3%
- Rhodocyclaceae 2.2%
- Aminicenantaceae 1.9%
- everything else 35.0%
- Incertae Sedis 59.5%
- RBG-16-58-14 5.3%
- Aminicenans 1.9%
- Candidatus Anammoximicrobium 1.7%
- Thiobacillus 1.5%
- Sh765B-TzT-35 1.4%
- Anaerolinea 1.2%
- everything else 27.5%
- uncultured bacterium 60.1%
- uncultured prokaryote 6.4%
- uncultured soil bacterium 5.0%
- metagenome 3.7%
- uncultured Chloroflexi bacterium 1.9%
- uncultured Acidobacteria bacterium 1.4%
- uncultured archaeon 1.2%
- everything else 20.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.