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SAMN06704775
Cd_contaminated_sediment_8
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
28,477
Reads
966
Observed features
6.403
Shannon
0.932
Evenness
966
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.39, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435138
Per-run QC
- 16S identity
- 97.8%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.6%
- Archaea 1.4%
- Chloroflexota 28.9%
- Pseudomonadota 18.7%
- Bacteroidota 9.4%
- Acidobacteriota 7.9%
- Verrucomicrobiota 7.6%
- Thermodesulfobacteriota 4.8%
- Planctomycetota 4.0%
- everything else 18.7%
- Anaerolineae 26.7%
- Gammaproteobacteria 17.1%
- Bacteroidia 9.4%
- Verrucomicrobiia 6.0%
- Vicinamibacteria 5.0%
- Cyanobacteriia 3.5%
- Planctomycetes 3.1%
- everything else 29.2%
- Anaerolineales 24.0%
- Burkholderiales 12.9%
- Incertae Sedis 8.3%
- Bacteroidales 6.0%
- Pedosphaerales 4.5%
- Chloroplast 3.4%
- Vicinamibacterales 3.3%
- everything else 37.7%
- Anaerolineaceae 24.0%
- Incertae Sedis 22.0%
- Pedosphaeraceae 4.5%
- Rhodocyclaceae 4.5%
- Hydrogenophilaceae 3.0%
- Pirellulaceae 2.7%
- Sulfurimonadaceae 2.6%
- everything else 36.7%
- Incertae Sedis 58.8%
- RBG-16-58-14 4.5%
- Sulfuricurvum 2.6%
- Thiobacillus 1.7%
- Candidatus Anammoximicrobium 1.6%
- Dechloromonas 1.4%
- Anaerolinea 1.4%
- everything else 28.1%
- uncultured bacterium 59.0%
- uncultured soil bacterium 8.2%
- metagenome 5.2%
- uncultured prokaryote 4.8%
- uncultured Chloroflexi bacterium 2.1%
- uncultured Epsilonproteobacteria bacterium 1.6%
- uncultured delta proteobacterium 1.4%
- everything else 17.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.