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SAMN06704769
Cd_contaminated_sediment_2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
23,268
Reads
790
Observed features
6.183
Shannon
0.927
Evenness
790
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.33, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435144
Per-run QC
- 16S identity
- 97.8%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.2%
- Archaea 1.8%
- Chloroflexota 29.5%
- Pseudomonadota 17.9%
- Acidobacteriota 9.5%
- Verrucomicrobiota 7.4%
- Cyanobacteriota 6.2%
- Bacteroidota 6.2%
- Planctomycetota 4.6%
- everything else 18.8%
- Anaerolineae 26.9%
- Gammaproteobacteria 16.6%
- Verrucomicrobiia 6.4%
- Cyanobacteriia 6.2%
- Bacteroidia 6.2%
- Vicinamibacteria 6.1%
- Planctomycetes 3.3%
- everything else 28.3%
- Anaerolineales 23.1%
- Burkholderiales 12.1%
- Incertae Sedis 10.3%
- Chloroplast 5.5%
- Pedosphaerales 4.9%
- Bacteroidales 3.9%
- Vicinamibacterales 3.5%
- everything else 36.8%
- Incertae Sedis 26.9%
- Anaerolineaceae 23.1%
- Pedosphaeraceae 4.9%
- Rhodocyclaceae 3.6%
- Hydrogenophilaceae 3.1%
- Pirellulaceae 3.0%
- Bacteroidetes vadinHA17 1.7%
- everything else 33.7%
- Incertae Sedis 61.4%
- RBG-16-58-14 4.0%
- Thiobacillus 1.9%
- Candidatus Anammoximicrobium 1.7%
- Sulfuricurvum 1.4%
- Sulfurisoma 1.3%
- Anaerolinea 1.3%
- everything else 26.8%
- uncultured bacterium 57.2%
- uncultured soil bacterium 7.7%
- uncultured prokaryote 5.9%
- metagenome 5.8%
- uncultured Chloroflexi bacterium 2.3%
- uncultured archaeon 1.1%
- uncultured Epsilonproteobacteria bacterium 1.1%
- everything else 19.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.