opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN14840293
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
11,653
Reads
313
Observed features
4.991
Shannon
0.869
Evenness
313
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13515, 4.60992
- Platforms
- Illumina MiSeq
Runs
SRR11698166
Per-run QC
- 16S identity
- 91.0%
- Q30
- 83.1%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 104 (0.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 28.5%
- Acidobacteriota 26.0%
- Bacteroidota 19.3%
- Verrucomicrobiota 7.8%
- Actinomycetota 6.5%
- Myxococcota 3.2%
- Nitrospirota 2.4%
- everything else 6.3%
- Bacteroidia 19.3%
- Gammaproteobacteria 16.4%
- Vicinamibacteria 14.1%
- Alphaproteobacteria 12.1%
- Verrucomicrobiia 7.8%
- Acidobacteriae 4.8%
- Blastocatellia 4.3%
- everything else 21.2%
- Vicinamibacterales 14.1%
- Burkholderiales 10.0%
- Hyphomicrobiales 7.4%
- Chitinophagales 5.5%
- Incertae Sedis 5.4%
- Flavobacteriales 5.3%
- Cytophagales 4.9%
- everything else 47.5%
- Incertae Sedis 17.1%
- Vicinamibacteraceae 7.5%
- Xanthobacteraceae 5.1%
- Nitrosomonadaceae 5.0%
- Chitinophagaceae 4.8%
- Flavobacteriaceae 4.2%
- Chthoniobacteraceae 4.1%
- everything else 52.2%
- Incertae Sedis 45.8%
- Flavobacterium 4.2%
- Candidatus Udaeobacter 3.9%
- Pedobacter 3.3%
- Acidibacter 3.2%
- Candidatus Solibacter 3.1%
- Nitrospira 2.4%
- everything else 34.1%
- uncultured bacterium 58.9%
- uncultured Acidobacteria bacterium 11.2%
- metagenome 7.1%
- uncultured Bradyrhizobium sp. 3.2%
- uncultured Bacteroidetes bacterium 2.0%
- Bradyrhizobium elkanii 1.3%
- uncultured proteobacterium 1.3%
- everything else 14.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 80% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 79% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.