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SAMN14840295
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
9,805
Reads
299
Observed features
4.796
Shannon
0.841
Evenness
299
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13515, 4.60992
- Platforms
- Illumina MiSeq
Runs
SRR11698154
Per-run QC
- 16S identity
- 90.5%
- Q30
- 82.7%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 222 (2.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 27.8%
- Acidobacteriota 26.5%
- Bacteroidota 13.5%
- Verrucomicrobiota 10.2%
- Actinomycetota 7.9%
- Myxococcota 3.1%
- Chloroflexota 3.0%
- everything else 8.1%
- Gammaproteobacteria 14.7%
- Bacteroidia 13.5%
- Alphaproteobacteria 13.1%
- Vicinamibacteria 12.0%
- Verrucomicrobiia 10.2%
- Acidobacteriae 6.5%
- Thermoleophilia 3.8%
- everything else 26.3%
- Vicinamibacterales 12.0%
- Hyphomicrobiales 9.6%
- Burkholderiales 9.0%
- Incertae Sedis 8.6%
- Chitinophagales 5.8%
- Chthoniobacterales 5.6%
- Cytophagales 5.5%
- everything else 43.9%
- Incertae Sedis 21.5%
- Xanthobacteraceae 7.3%
- Vicinamibacteraceae 6.4%
- Chthoniobacteraceae 5.6%
- Microscillaceae 5.5%
- Nitrosomonadaceae 5.4%
- Chitinophagaceae 5.1%
- everything else 43.0%
- Incertae Sedis 56.7%
- Candidatus Udaeobacter 5.2%
- Chryseotalea 3.5%
- Nitrospira 2.8%
- Acidibacter 2.6%
- Bradyrhizobium 2.4%
- Candidatus Solibacter 2.4%
- everything else 24.4%
- uncultured bacterium 67.5%
- uncultured Acidobacteria bacterium 11.8%
- metagenome 10.3%
- uncultured proteobacterium 2.6%
- uncultured soil bacterium 1.4%
- uncultured actinobacterium 1.1%
- uncultured Comamonadaceae bacterium 0.6%
- everything else 4.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.