opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN14840297
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
9,280
Reads
199
Observed features
4.55
Shannon
0.86
Evenness
199
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13525, 4.60998
- Platforms
- Illumina MiSeq
Runs
SRR11698145
Per-run QC
- 16S identity
- 90.8%
- Q30
- 83.3%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 293 (3.2%)
- ASV_1112 · Candidatus Udaeobacter 244 (2.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 32.4%
- Pseudomonadota 22.7%
- Bacteroidota 14.8%
- Verrucomicrobiota 11.0%
- Actinomycetota 4.2%
- Myxococcota 3.6%
- Nitrospirota 3.3%
- everything else 8.2%
- Vicinamibacteria 14.9%
- Bacteroidia 14.8%
- Gammaproteobacteria 14.6%
- Verrucomicrobiia 11.0%
- Alphaproteobacteria 8.0%
- Acidobacteriae 6.6%
- Blastocatellia 4.2%
- everything else 25.9%
- Vicinamibacterales 14.9%
- Burkholderiales 9.4%
- Incertae Sedis 8.6%
- Hyphomicrobiales 7.0%
- Pedosphaerales 5.4%
- Chitinophagales 4.7%
- Flavobacteriales 4.5%
- everything else 45.5%
- Incertae Sedis 22.2%
- Vicinamibacteraceae 6.7%
- Nitrosomonadaceae 5.9%
- Pedosphaeraceae 5.4%
- Xanthobacteraceae 5.4%
- Flavobacteriaceae 4.4%
- Chitinophagaceae 4.2%
- everything else 45.9%
- Incertae Sedis 56.9%
- Flavobacterium 4.4%
- Nitrospira 3.3%
- MND1 2.9%
- Candidatus Udaeobacter 2.7%
- Candidatus Solibacter 2.3%
- Bryobacter 2.1%
- everything else 25.4%
- uncultured bacterium 60.8%
- uncultured Acidobacteria bacterium 17.1%
- uncultured Verrucomicrobia bacterium 4.8%
- metagenome 4.0%
- uncultured beta proteobacterium 3.3%
- uncultured proteobacterium 2.0%
- uncultured soil bacterium 1.5%
- everything else 6.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.