opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN14840315
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
12,357
Reads
290
Observed features
5.033
Shannon
0.888
Evenness
290
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13569, 4.61058
- Platforms
- Illumina MiSeq
Runs
SRR11698151
Per-run QC
- 16S identity
- 91.2%
- Q30
- 84.1%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1112 · Candidatus Udaeobacter 215 (1.7%)
- ASV_3334 · Rhodanobacter 74 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 32.0%
- Acidobacteriota 22.2%
- Bacteroidota 9.4%
- Actinomycetota 9.1%
- Verrucomicrobiota 7.5%
- Thermodesulfobacteriota 4.7%
- Myxococcota 4.3%
- everything else 10.8%
- Gammaproteobacteria 18.2%
- Alphaproteobacteria 13.8%
- Acidobacteriae 12.7%
- Bacteroidia 9.4%
- Verrucomicrobiia 7.5%
- Vicinamibacteria 4.9%
- Desulfuromonadia 4.6%
- everything else 28.9%
- Burkholderiales 12.9%
- Hyphomicrobiales 10.4%
- Incertae Sedis 7.3%
- Solibacterales 5.0%
- Terriglobales 5.0%
- Vicinamibacterales 4.7%
- Chitinophagales 4.7%
- everything else 50.0%
- Incertae Sedis 20.4%
- Xanthobacteraceae 7.5%
- Nitrosomonadaceae 5.4%
- Solibacteraceae 5.0%
- Geobacteraceae 4.6%
- Pedosphaeraceae 4.0%
- Chitinophagaceae 3.9%
- everything else 49.2%
- Incertae Sedis 49.7%
- Candidatus Solibacter 5.0%
- Nitrospira 2.8%
- Bradyrhizobium 2.6%
- Geobacter 2.5%
- GOUTA6 2.2%
- Candidatus Udaeobacter 2.1%
- everything else 33.0%
- uncultured bacterium 72.1%
- uncultured Acidobacteria bacterium 6.8%
- metagenome 4.1%
- uncultured Verrucomicrobia bacterium 2.4%
- uncultured delta proteobacterium 1.6%
- Escherichia coli 1.1%
- uncultured actinobacterium 1.0%
- everything else 11.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.