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SAMN14840314
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
10,978
Reads
264
Observed features
4.814
Shannon
0.863
Evenness
264
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13569, 4.61058
- Platforms
- Illumina MiSeq
Runs
SRR11698152
Per-run QC
- 16S identity
- 90.6%
- Q30
- 83.6%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1112 · Candidatus Udaeobacter 200 (1.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 32.6%
- Acidobacteriota 29.9%
- Bacteroidota 10.9%
- Verrucomicrobiota 7.2%
- Myxococcota 4.2%
- Thermodesulfobacteriota 3.8%
- Actinomycetota 3.6%
- everything else 7.8%
- Gammaproteobacteria 24.9%
- Acidobacteriae 17.9%
- Bacteroidia 10.9%
- Alphaproteobacteria 7.7%
- Verrucomicrobiia 7.1%
- Vicinamibacteria 4.1%
- Holophagae 3.5%
- everything else 23.7%
- Burkholderiales 19.6%
- Terriglobales 8.5%
- Incertae Sedis 6.2%
- Solibacterales 6.1%
- Hyphomicrobiales 5.3%
- Flavobacteriales 5.2%
- Chitinophagales 4.3%
- everything else 44.8%
- Incertae Sedis 22.4%
- SC-I-84 6.9%
- Solibacteraceae 6.1%
- Nitrosomonadaceae 5.1%
- Flavobacteriaceae 4.7%
- Pedosphaeraceae 4.3%
- Xanthobacteraceae 4.0%
- everything else 46.6%
- Incertae Sedis 48.9%
- Candidatus Solibacter 6.1%
- Flavobacterium 4.7%
- Candidatus Koribacter 3.7%
- Nitrospira 3.0%
- Candidatus Udaeobacter 2.6%
- Pelotalea 2.4%
- everything else 28.7%
- uncultured bacterium 68.9%
- uncultured Acidobacteria bacterium 7.8%
- uncultured soil bacterium 2.9%
- metagenome 2.4%
- uncultured Comamonadaceae bacterium 2.0%
- uncultured Verrucomicrobia bacterium 1.9%
- uncultured Verrucomicrobia subdivision 3 bacterium 1.7%
- everything else 12.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.