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SAMN14840311
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
10,887
Reads
259
Observed features
4.912
Shannon
0.884
Evenness
259
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13566, 4.61055
- Platforms
- Illumina MiSeq
Runs
SRR11698156
Per-run QC
- 16S identity
- 91.5%
- Q30
- 85.0%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 94 (0.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 33.0%
- Pseudomonadota 31.7%
- Bacteroidota 10.4%
- Verrucomicrobiota 10.3%
- Myxococcota 4.7%
- Actinomycetota 2.5%
- Gemmatimonadota 1.4%
- everything else 5.9%
- Acidobacteriae 22.8%
- Gammaproteobacteria 18.8%
- Alphaproteobacteria 12.9%
- Bacteroidia 10.4%
- Verrucomicrobiia 10.3%
- Vicinamibacteria 4.3%
- Polyangiia 3.1%
- everything else 17.3%
- Burkholderiales 11.8%
- Terriglobales 10.6%
- Incertae Sedis 6.9%
- Solibacterales 6.5%
- Hyphomicrobiales 5.9%
- Pedosphaerales 4.8%
- Chitinophagales 4.6%
- everything else 48.9%
- Incertae Sedis 24.6%
- Solibacteraceae 6.5%
- Pedosphaeraceae 4.8%
- Xanthobacteraceae 4.1%
- Chitinophagaceae 3.9%
- Nitrosomonadaceae 3.9%
- SC-I-84 3.6%
- everything else 48.5%
- Incertae Sedis 50.6%
- Candidatus Solibacter 6.5%
- Candidatus Udaeobacter 3.3%
- Candidatus Koribacter 3.3%
- Bryobacter 2.4%
- Chryseotalea 2.2%
- Acidibacter 2.0%
- everything else 29.7%
- uncultured bacterium 69.6%
- uncultured Acidobacteria bacterium 8.4%
- uncultured Verrucomicrobia bacterium 2.9%
- metagenome 2.8%
- Bradyrhizobium elkanii 1.5%
- uncultured gamma proteobacterium 1.4%
- uncultured delta proteobacterium 1.2%
- everything else 12.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.