opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN14840294
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
9,424
Reads
239
Observed features
4.681
Shannon
0.855
Evenness
239
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13515, 4.60992
- Platforms
- Illumina MiSeq
Runs
SRR11698165
Per-run QC
- 16S identity
- 90.7%
- Q30
- 84.4%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Actinomycetota 32.0%
- Pseudomonadota 22.5%
- Acidobacteriota 12.6%
- Bacteroidota 10.5%
- Verrucomicrobiota 8.4%
- Myxococcota 5.2%
- Chloroflexota 4.5%
- everything else 4.2%
- Alphaproteobacteria 14.9%
- Thermoleophilia 13.6%
- Actinobacteria 12.3%
- Bacteroidia 10.5%
- Verrucomicrobiia 8.4%
- Gammaproteobacteria 7.6%
- Vicinamibacteria 6.6%
- everything else 26.1%
- Hyphomicrobiales 13.2%
- Gaiellales 9.0%
- Incertae Sedis 6.8%
- Vicinamibacterales 6.3%
- Cytophagales 5.7%
- Chthoniobacterales 4.9%
- Solirubrobacterales 4.7%
- everything else 49.5%
- Incertae Sedis 17.3%
- Xanthobacteraceae 9.0%
- Gaiellaceae 6.3%
- Microscillaceae 5.7%
- Chthoniobacteraceae 4.9%
- Nocardioidaceae 4.2%
- 67-14 3.4%
- everything else 49.3%
- Incertae Sedis 44.0%
- Gaiella 6.3%
- Bradyrhizobium 4.8%
- Candidatus Udaeobacter 4.7%
- Chryseotalea 3.5%
- Acidibacter 3.2%
- Nocardioides 2.9%
- everything else 30.6%
- uncultured bacterium 62.4%
- metagenome 7.8%
- uncultured Acidobacteria bacterium 6.9%
- uncultured Verrucomicrobia bacterium 4.6%
- uncultured proteobacterium 3.2%
- actinobacterium WWH12 3.1%
- uncultured actinobacterium 2.4%
- everything else 9.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 79% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 76% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 76% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 75% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 74% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.