opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN14840298
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
11,728
Reads
361
Observed features
4.959
Shannon
0.842
Evenness
361
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13525, 4.60998
- Platforms
- Illumina MiSeq
Runs
SRR11698144
Per-run QC
- 16S identity
- 90.9%
- Q30
- 82.4%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 82 (0.7%)
- ASV_1112 · Candidatus Udaeobacter 118 (1.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 26.9%
- Pseudomonadota 24.0%
- Bacteroidota 15.4%
- Actinomycetota 10.2%
- Verrucomicrobiota 9.8%
- Gemmatimonadota 3.0%
- Chloroflexota 2.8%
- everything else 7.8%
- Bacteroidia 15.4%
- Gammaproteobacteria 13.6%
- Vicinamibacteria 10.8%
- Alphaproteobacteria 10.4%
- Verrucomicrobiia 9.8%
- Acidobacteriae 7.8%
- Actinobacteria 4.9%
- everything else 27.3%
- Vicinamibacterales 10.7%
- Burkholderiales 8.9%
- Hyphomicrobiales 8.5%
- Incertae Sedis 8.4%
- Chitinophagales 6.4%
- Pedosphaerales 5.6%
- Cytophagales 4.8%
- everything else 46.7%
- Incertae Sedis 22.9%
- Chitinophagaceae 6.4%
- Xanthobacteraceae 6.3%
- Nitrosomonadaceae 6.0%
- Pedosphaeraceae 5.6%
- Vicinamibacteraceae 5.0%
- Microscillaceae 4.8%
- everything else 43.1%
- Incertae Sedis 55.6%
- MND1 3.4%
- Candidatus Udaeobacter 3.1%
- Flavobacterium 2.7%
- Chryseotalea 2.3%
- Acidibacter 2.1%
- Gaiella 1.9%
- everything else 28.9%
- uncultured bacterium 67.9%
- uncultured Acidobacteria bacterium 9.6%
- metagenome 7.5%
- uncultured proteobacterium 1.9%
- Sporocytophaga sp. A61 1.8%
- bacterium Ellin515 1.1%
- uncultured Verrucomicrobia bacterium 1.0%
- everything else 9.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.