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SAMN14840318
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
14,930
Reads
225
Observed features
4.744
Shannon
0.876
Evenness
225
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13531, 4.61159
- Platforms
- Illumina MiSeq
Runs
SRR11698148
Per-run QC
- 16S identity
- 90.5%
- Q30
- 85.5%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_3334 · Rhodanobacter 297 (2.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 34.8%
- Acidobacteriota 28.5%
- Bacteroidota 10.9%
- Actinomycetota 7.7%
- Verrucomicrobiota 6.8%
- Myxococcota 3.3%
- Gemmatimonadota 2.1%
- everything else 5.8%
- Gammaproteobacteria 21.0%
- Acidobacteriae 19.4%
- Alphaproteobacteria 13.8%
- Bacteroidia 10.9%
- Verrucomicrobiia 6.8%
- Vicinamibacteria 4.0%
- Actinobacteria 4.0%
- everything else 20.1%
- Burkholderiales 14.7%
- Terriglobales 10.3%
- Hyphomicrobiales 8.0%
- Solibacterales 5.9%
- Chitinophagales 4.9%
- Vicinamibacterales 4.0%
- Chthoniobacterales 3.5%
- everything else 48.7%
- Incertae Sedis 20.5%
- Xanthobacteraceae 6.3%
- Solibacteraceae 5.9%
- Chitinophagaceae 4.9%
- Comamonadaceae 3.9%
- Chthoniobacteraceae 3.3%
- Oxalobacteraceae 3.2%
- everything else 51.9%
- Incertae Sedis 45.0%
- Candidatus Solibacter 5.9%
- Candidatus Udaeobacter 3.1%
- Candidatus Koribacter 2.9%
- Bradyrhizobium 2.6%
- Ellin6067 2.4%
- Rhodanobacter 2.4%
- everything else 35.6%
- uncultured bacterium 66.6%
- uncultured forest soil bacterium 5.3%
- uncultured Acidobacteria bacterium 4.5%
- Bradyrhizobium elkanii 2.6%
- uncultured Verrucomicrobia bacterium 2.6%
- metagenome 2.4%
- uncultured Conexibacteraceae bacterium 2.0%
- everything else 14.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.