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SAMN14840317
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
17,012
Reads
280
Observed features
4.886
Shannon
0.867
Evenness
280
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13531, 4.61159
- Platforms
- Illumina MiSeq
Runs
SRR11698149
Per-run QC
- 16S identity
- 90.4%
- Q30
- 84.7%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_3334 · Rhodanobacter 345 (2.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 41.8%
- Acidobacteriota 24.1%
- Bacteroidota 8.5%
- Verrucomicrobiota 7.2%
- Actinomycetota 6.7%
- Myxococcota 3.1%
- Thermodesulfobacteriota 1.8%
- everything else 6.8%
- Gammaproteobacteria 26.9%
- Acidobacteriae 15.8%
- Alphaproteobacteria 14.8%
- Bacteroidia 8.5%
- Verrucomicrobiia 7.2%
- Actinobacteria 4.4%
- Vicinamibacteria 3.5%
- everything else 18.9%
- Burkholderiales 21.0%
- Hyphomicrobiales 10.2%
- Terriglobales 7.9%
- Chitinophagales 4.4%
- Solibacterales 4.3%
- Incertae Sedis 3.7%
- Vicinamibacterales 3.5%
- everything else 45.0%
- Incertae Sedis 18.8%
- Oxalobacteraceae 11.1%
- Xanthobacteraceae 8.6%
- Solibacteraceae 4.3%
- Chitinophagaceae 4.3%
- Pedosphaeraceae 3.0%
- Nitrosomonadaceae 3.0%
- everything else 46.8%
- Incertae Sedis 42.8%
- Massilia 9.8%
- Candidatus Solibacter 4.3%
- Bradyrhizobium 4.1%
- Ellin6067 2.4%
- Candidatus Udaeobacter 2.3%
- Acidibacter 2.3%
- everything else 31.9%
- uncultured bacterium 62.3%
- uncultured Acidobacteria bacterium 8.2%
- Bradyrhizobium elkanii 4.1%
- uncultured Hyphomicrobiaceae bacterium 3.9%
- Oxalobacteraceae bacterium HRT30 3.7%
- uncultured Verrucomicrobia bacterium 2.3%
- metagenome 2.0%
- everything else 13.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 77% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 77% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 75% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.