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SAMN14840316
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
14,201
Reads
307
Observed features
5.113
Shannon
0.893
Evenness
307
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13569, 4.61058
- Platforms
- Illumina MiSeq
Runs
SRR11698150
Per-run QC
- 16S identity
- 90.7%
- Q30
- 82.5%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_1112 · Candidatus Udaeobacter 165 (1.2%)
- ASV_3334 · Rhodanobacter 107 (0.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 30.8%
- Acidobacteriota 26.9%
- Bacteroidota 7.5%
- Verrucomicrobiota 7.2%
- Thermodesulfobacteriota 7.1%
- Myxococcota 4.5%
- Actinomycetota 3.8%
- everything else 12.1%
- Gammaproteobacteria 23.7%
- Acidobacteriae 11.7%
- Bacteroidia 7.5%
- Alphaproteobacteria 7.1%
- Verrucomicrobiia 7.0%
- Vicinamibacteria 7.0%
- Desulfuromonadia 6.7%
- everything else 29.1%
- Burkholderiales 18.4%
- Incertae Sedis 10.0%
- Vicinamibacterales 6.9%
- Geobacterales 6.7%
- Terriglobales 5.7%
- Hyphomicrobiales 4.7%
- Chitinophagales 4.0%
- everything else 43.7%
- Incertae Sedis 25.2%
- SC-I-84 7.9%
- Geobacteraceae 6.7%
- Nitrosomonadaceae 4.2%
- Pedosphaeraceae 3.8%
- Solibacteraceae 3.7%
- Gemmatimonadaceae 3.5%
- everything else 45.0%
- Incertae Sedis 57.4%
- Pelotalea 4.3%
- Candidatus Solibacter 3.7%
- Candidatus Koribacter 3.0%
- Nitrospira 2.5%
- Acidibacter 1.9%
- Candidatus Udaeobacter 1.7%
- everything else 25.5%
- uncultured bacterium 75.1%
- uncultured Acidobacteria bacterium 7.6%
- metagenome 3.3%
- uncultured delta proteobacterium 1.5%
- iron-reducing bacterium enrichment culture clone FEA_2_G2 1.3%
- uncultured Verrucomicrobia bacterium 1.2%
- uncultured proteobacterium 1.0%
- everything else 9.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.