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SAMN14840299
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
7,750
Reads
262
Observed features
4.64
Shannon
0.833
Evenness
262
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13534, 4.61008
- Platforms
- Illumina MiSeq
Runs
SRR11698143
Per-run QC
- 16S identity
- 90.2%
- Q30
- 83.6%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 482 (6.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 30.4%
- Acidobacteriota 26.7%
- Bacteroidota 12.8%
- Nitrospirota 6.2%
- Gemmatimonadota 5.3%
- Verrucomicrobiota 4.9%
- Actinomycetota 4.5%
- everything else 9.0%
- Gammaproteobacteria 19.0%
- Bacteroidia 12.8%
- Vicinamibacteria 12.2%
- Alphaproteobacteria 11.5%
- Nitrospiria 6.2%
- Acidobacteriae 5.4%
- Gemmatimonadia 5.3%
- everything else 27.6%
- Vicinamibacterales 12.1%
- Burkholderiales 11.4%
- Incertae Sedis 10.1%
- Hyphomicrobiales 8.6%
- Nitrospirales 6.2%
- Chitinophagales 6.0%
- Gemmatimonadales 5.3%
- everything else 40.3%
- Incertae Sedis 20.3%
- Nitrosomonadaceae 8.3%
- Vicinamibacteraceae 7.1%
- Nitrospiraceae 6.2%
- Chitinophagaceae 5.4%
- Xanthobacteraceae 5.4%
- Gemmatimonadaceae 5.3%
- everything else 42.1%
- Incertae Sedis 60.1%
- Nitrospira 6.2%
- MND1 4.3%
- Candidatus Solibacter 2.5%
- Acidibacter 2.4%
- Bradyrhizobium 1.9%
- IS-44 1.9%
- everything else 20.5%
- uncultured bacterium 71.0%
- uncultured Acidobacteria bacterium 10.9%
- metagenome 6.3%
- uncultured Bacteroidetes bacterium 2.7%
- uncultured proteobacterium 2.5%
- Bradyrhizobium elkanii 1.9%
- uncultured actinobacterium 0.8%
- everything else 3.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.