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SAMN14840296
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
9,240
Reads
300
Observed features
4.913
Shannon
0.861
Evenness
300
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13525, 4.60998
- Platforms
- Illumina MiSeq
Runs
SRR11698146
Per-run QC
- 16S identity
- 90.6%
- Q30
- 83.7%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 268 (2.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 32.2%
- Pseudomonadota 26.0%
- Bacteroidota 15.0%
- Verrucomicrobiota 6.1%
- Nitrospirota 4.8%
- Gemmatimonadota 4.1%
- Actinomycetota 3.9%
- everything else 7.9%
- Gammaproteobacteria 18.1%
- Acidobacteriae 17.2%
- Bacteroidia 15.0%
- Vicinamibacteria 8.7%
- Alphaproteobacteria 7.9%
- Verrucomicrobiia 6.1%
- Nitrospiria 4.8%
- everything else 22.2%
- Burkholderiales 12.1%
- Vicinamibacterales 8.7%
- Incertae Sedis 6.8%
- Subgroup 2 5.8%
- Cytophagales 5.7%
- Terriglobales 5.3%
- Hyphomicrobiales 5.1%
- everything else 50.4%
- Incertae Sedis 26.7%
- Nitrosomonadaceae 7.1%
- Microscillaceae 5.4%
- Nitrospiraceae 4.8%
- Chitinophagaceae 4.2%
- Gemmatimonadaceae 4.0%
- Vicinamibacteraceae 3.5%
- everything else 44.2%
- Incertae Sedis 52.4%
- Nitrospira 4.8%
- Candidatus Solibacter 3.3%
- MND1 3.1%
- Flavobacterium 3.0%
- Bryobacter 2.8%
- Ellin6067 2.1%
- everything else 28.4%
- uncultured bacterium 64.8%
- uncultured Acidobacteria bacterium 9.7%
- metagenome 5.0%
- uncultured forest soil bacterium 3.4%
- uncultured Verrucomicrobia bacterium 3.0%
- uncultured Pseudomonas sp. 1.7%
- uncultured Acidobacteriaceae bacterium 1.5%
- everything else 11.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.