opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN14840307
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
11,379
Reads
288
Observed features
4.622
Shannon
0.816
Evenness
288
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13548, 4.61029
- Platforms
- Illumina MiSeq
Runs
SRR11698160
Per-run QC
- 16S identity
- 91.5%
- Q30
- 83.7%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_2223 · Nitrospira 401 (3.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 32.7%
- Pseudomonadota 28.9%
- Bacteroidota 7.2%
- Gemmatimonadota 6.6%
- Nitrospirota 3.6%
- Methylomirabilota 3.4%
- Chloroflexota 3.3%
- everything else 14.3%
- Acidobacteriae 24.5%
- Gammaproteobacteria 20.7%
- Alphaproteobacteria 8.3%
- Bacteroidia 7.2%
- Gemmatimonadia 6.6%
- Nitrospiria 3.6%
- Methylomirabilia 3.4%
- everything else 25.7%
- Burkholderiales 16.6%
- Terriglobales 14.2%
- Gemmatimonadales 6.6%
- Incertae Sedis 5.9%
- Solibacterales 4.8%
- Bryobacterales 4.5%
- Hyphomicrobiales 4.1%
- everything else 43.3%
- Incertae Sedis 31.4%
- Nitrosomonadaceae 11.5%
- Gemmatimonadaceae 6.6%
- Solibacteraceae 4.8%
- Bryobacteraceae 4.5%
- Nitrospiraceae 3.6%
- Flavobacteriaceae 2.7%
- everything else 34.9%
- Incertae Sedis 53.8%
- Candidatus Solibacter 4.8%
- GOUTA6 4.7%
- Bryobacter 4.5%
- Nitrospira 3.6%
- MND1 3.2%
- Flavobacterium 2.7%
- everything else 22.7%
- uncultured bacterium 74.8%
- uncultured Acidobacteria bacterium 9.3%
- metagenome 4.6%
- freshwater sediment metagenome 1.8%
- uncultured prokaryote 1.4%
- uncultured Rhodocyclaceae bacterium 1.1%
- uncultured beta proteobacterium 0.9%
- everything else 6.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.