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SAMN14840302
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
13,268
Reads
305
Observed features
4.906
Shannon
0.858
Evenness
305
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.1354, 4.61018
- Platforms
- Illumina MiSeq
Runs
SRR11698140
Per-run QC
- 16S identity
- 90.3%
- Q30
- 83.4%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 36.1%
- Acidobacteriota 22.5%
- Bacteroidota 9.4%
- Gemmatimonadota 7.2%
- Nitrospirota 5.5%
- Verrucomicrobiota 3.5%
- Myxococcota 3.4%
- everything else 12.3%
- Gammaproteobacteria 24.5%
- Alphaproteobacteria 11.6%
- Bacteroidia 9.4%
- Acidobacteriae 8.2%
- Vicinamibacteria 7.3%
- Gemmatimonadia 7.2%
- Nitrospiria 5.5%
- everything else 26.2%
- Burkholderiales 13.6%
- Hyphomicrobiales 8.4%
- Incertae Sedis 8.2%
- Vicinamibacterales 7.3%
- Gemmatimonadales 7.2%
- Nitrospirales 5.5%
- PLTA13 4.9%
- everything else 44.8%
- Incertae Sedis 28.7%
- Nitrosomonadaceae 8.5%
- Gemmatimonadaceae 7.2%
- Nitrospiraceae 5.5%
- Xanthobacteraceae 4.1%
- Microscillaceae 4.0%
- Vicinamibacteraceae 3.1%
- everything else 38.9%
- Incertae Sedis 58.8%
- Nitrospira 5.5%
- MND1 5.2%
- Candidatus Solibacter 2.0%
- Chryseotalea 2.0%
- IS-44 1.7%
- Flavobacterium 1.6%
- everything else 23.2%
- uncultured bacterium 80.5%
- metagenome 5.8%
- uncultured Acidobacteria bacterium 2.1%
- arsenic-oxidizing bacterium C12 1.6%
- uncultured Alphaproteobacteria bacterium 1.5%
- Bradyrhizobium elkanii 1.2%
- uncultured beta proteobacterium 1.1%
- everything else 6.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.