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SAMN14840303
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
15,027
Reads
281
Observed features
4.902
Shannon
0.869
Evenness
281
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.1354, 4.61018
- Platforms
- Illumina MiSeq
Runs
SRR11698164
Per-run QC
- 16S identity
- 91.4%
- Q30
- 83.2%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 33.0%
- Acidobacteriota 24.0%
- Gemmatimonadota 8.0%
- Bacteroidota 6.7%
- Nitrospirota 5.0%
- Actinomycetota 3.9%
- Chloroflexota 3.9%
- everything else 15.5%
- Gammaproteobacteria 22.3%
- Acidobacteriae 10.9%
- Alphaproteobacteria 10.7%
- Gemmatimonadia 8.0%
- Vicinamibacteria 6.7%
- Bacteroidia 6.7%
- Nitrospiria 5.0%
- everything else 29.7%
- Burkholderiales 13.9%
- Incertae Sedis 10.1%
- Gemmatimonadales 8.0%
- Terriglobales 6.9%
- Vicinamibacterales 6.5%
- Hyphomicrobiales 6.4%
- Nitrospirales 5.0%
- everything else 43.1%
- Incertae Sedis 33.3%
- Nitrosomonadaceae 9.1%
- Gemmatimonadaceae 8.0%
- Nitrospiraceae 5.0%
- Xanthobacteraceae 3.1%
- Microscillaceae 2.8%
- Solibacteraceae 2.4%
- everything else 36.2%
- Incertae Sedis 62.8%
- MND1 5.1%
- Nitrospira 5.0%
- GOUTA6 2.5%
- Candidatus Solibacter 2.4%
- Flavobacterium 1.8%
- Chryseotalea 1.5%
- everything else 18.8%
- uncultured bacterium 73.5%
- uncultured Acidobacteria bacterium 7.4%
- metagenome 5.7%
- uncultured Candidatus Koribacter sp. 1.9%
- uncultured beta proteobacterium 1.5%
- uncultured delta proteobacterium 1.4%
- uncultured Gemmatimonadetes bacterium 1.2%
- everything else 7.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.