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SAMN14840301
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
10,018
Reads
270
Observed features
4.658
Shannon
0.832
Evenness
270
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13534, 4.61008
- Platforms
- Illumina MiSeq
Runs
SRR11698141
Per-run QC
- 16S identity
- 90.9%
- Q30
- 83.6%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 420 (4.2%)
- ASV_2223 · Nitrospira 300 (3.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 31.2%
- Acidobacteriota 25.7%
- Bacteroidota 11.5%
- Nitrospirota 7.4%
- Verrucomicrobiota 6.0%
- Gemmatimonadota 5.8%
- Myxococcota 4.1%
- everything else 8.2%
- Gammaproteobacteria 21.5%
- Acidobacteriae 16.8%
- Bacteroidia 11.5%
- Alphaproteobacteria 9.7%
- Nitrospiria 7.4%
- Verrucomicrobiia 6.0%
- Gemmatimonadia 5.8%
- everything else 21.2%
- Burkholderiales 14.2%
- Terriglobales 9.0%
- Nitrospirales 7.4%
- Incertae Sedis 6.3%
- Gemmatimonadales 5.8%
- Hyphomicrobiales 5.0%
- Vicinamibacterales 4.8%
- everything else 47.6%
- Incertae Sedis 25.7%
- Nitrosomonadaceae 10.0%
- Nitrospiraceae 7.4%
- Gemmatimonadaceae 5.8%
- Microscillaceae 4.3%
- Chitinophagaceae 3.9%
- Xanthobacteraceae 3.8%
- everything else 39.2%
- Incertae Sedis 49.5%
- Nitrospira 7.4%
- MND1 4.9%
- Candidatus Solibacter 3.3%
- Acidibacter 2.5%
- Chryseotalea 2.5%
- Bryobacter 2.3%
- everything else 27.5%
- uncultured bacterium 69.9%
- uncultured Acidobacteria bacterium 13.6%
- metagenome 5.8%
- uncultured proteobacterium 2.7%
- Bradyrhizobium elkanii 1.5%
- uncultured beta proteobacterium 1.1%
- Flavobacterium sp. BF105 1.0%
- everything else 4.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.