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SAMN14840304
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
8,100
Reads
265
Observed features
4.616
Shannon
0.827
Evenness
265
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.1354, 4.61018
- Platforms
- Illumina MiSeq
Runs
SRR11698163
Per-run QC
- 16S identity
- 90.5%
- Q30
- 82.5%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Nitrospira 369 (4.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 38.4%
- Acidobacteriota 22.0%
- Bacteroidota 8.9%
- Nitrospirota 7.3%
- Gemmatimonadota 6.3%
- Actinomycetota 4.5%
- Chloroflexota 3.3%
- everything else 9.2%
- Gammaproteobacteria 27.1%
- Alphaproteobacteria 11.3%
- Acidobacteriae 9.0%
- Bacteroidia 8.9%
- Vicinamibacteria 8.1%
- Nitrospiria 7.3%
- Gemmatimonadia 6.3%
- everything else 21.9%
- Burkholderiales 15.9%
- Incertae Sedis 9.6%
- Vicinamibacterales 8.0%
- Hyphomicrobiales 7.8%
- Nitrospirales 7.3%
- Gemmatimonadales 6.3%
- Cytophagales 4.8%
- everything else 40.3%
- Incertae Sedis 31.2%
- Nitrosomonadaceae 11.5%
- Nitrospiraceae 7.3%
- Gemmatimonadaceae 6.3%
- Microscillaceae 4.8%
- Xanthobacteraceae 4.2%
- Vicinamibacteraceae 3.4%
- everything else 31.5%
- Incertae Sedis 57.5%
- Nitrospira 7.3%
- MND1 5.9%
- GOUTA6 2.8%
- Candidatus Solibacter 2.8%
- Chryseotalea 2.4%
- IS-44 2.2%
- everything else 19.1%
- uncultured bacterium 74.0%
- uncultured Acidobacteria bacterium 7.4%
- metagenome 5.6%
- uncultured Burkholderiaceae bacterium 2.6%
- Bradyrhizobium elkanii 1.7%
- uncultured Alphaproteobacteria bacterium 1.5%
- uncultured Pseudomonas sp. 1.1%
- everything else 5.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.