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SAMN14840300
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
8,041
Reads
220
Observed features
4.536
Shannon
0.841
Evenness
220
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13534, 4.61008
- Platforms
- Illumina MiSeq
Runs
SRR11698142
Per-run QC
- 16S identity
- 91.0%
- Q30
- 83.7%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Nitrospira 278 (3.5%)
- ASV_2223 · Nitrospira 210 (2.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 27.7%
- Acidobacteriota 25.2%
- Gemmatimonadota 11.7%
- Bacteroidota 8.6%
- Nitrospirota 6.9%
- Verrucomicrobiota 5.0%
- Actinomycetota 4.9%
- everything else 10.0%
- Gammaproteobacteria 18.2%
- Gemmatimonadia 11.6%
- Alphaproteobacteria 9.5%
- Acidobacteriae 9.3%
- Vicinamibacteria 9.3%
- Bacteroidia 8.6%
- Nitrospiria 6.9%
- everything else 26.6%
- Burkholderiales 11.7%
- Gemmatimonadales 11.6%
- Incertae Sedis 10.6%
- Vicinamibacterales 9.3%
- Nitrospirales 6.9%
- Terriglobales 5.5%
- Hyphomicrobiales 5.2%
- everything else 39.1%
- Incertae Sedis 26.0%
- Gemmatimonadaceae 11.6%
- Nitrosomonadaceae 9.1%
- Nitrospiraceae 6.9%
- Vicinamibacteraceae 5.6%
- Microscillaceae 4.9%
- Pedosphaeraceae 4.0%
- everything else 31.9%
- Incertae Sedis 59.4%
- Nitrospira 6.9%
- MND1 3.3%
- IS-44 3.0%
- GOUTA6 2.3%
- Chryseotalea 2.2%
- SWB02 1.8%
- everything else 21.2%
- uncultured bacterium 77.1%
- uncultured Acidobacteria bacterium 6.3%
- metagenome 4.8%
- uncultured beta proteobacterium 2.8%
- uncultured delta proteobacterium 1.7%
- uncultured Burkholderiaceae bacterium 1.5%
- Bradyrhizobium elkanii 1.3%
- everything else 4.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.