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SAMN14840306
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
11,899
Reads
173
Observed features
4.4
Shannon
0.854
Evenness
173
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13548, 4.61029
- Platforms
- Illumina MiSeq
Runs
SRR11698161
Per-run QC
- 16S identity
- 91.1%
- Q30
- 85.5%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_2223 · Nitrospira 259 (2.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 35.8%
- Pseudomonadota 24.4%
- Gemmatimonadota 8.2%
- Myxococcota 5.6%
- Methylomirabilota 5.3%
- Actinomycetota 4.6%
- Nitrospirota 3.8%
- everything else 12.4%
- Acidobacteriae 24.2%
- Gammaproteobacteria 16.7%
- Gemmatimonadia 8.2%
- Alphaproteobacteria 7.7%
- Methylomirabilia 5.3%
- Holophagae 4.4%
- Blastocatellia 4.3%
- everything else 29.2%
- Burkholderiales 13.8%
- Terriglobales 13.6%
- Incertae Sedis 8.6%
- Gemmatimonadales 8.2%
- Solibacterales 7.4%
- Rokubacteriales 5.3%
- Subgroup 7 4.0%
- everything else 39.1%
- Incertae Sedis 38.0%
- Nitrosomonadaceae 9.0%
- Gemmatimonadaceae 8.2%
- Solibacteraceae 7.4%
- Nitrospiraceae 3.8%
- Ilumatobacteraceae 3.6%
- Geobacteraceae 3.4%
- everything else 26.6%
- Incertae Sedis 59.9%
- Candidatus Solibacter 7.4%
- Nitrospira 3.8%
- CL500-29 marine group 3.5%
- MND1 3.3%
- Bryobacter 2.6%
- GOUTA6 2.5%
- everything else 16.9%
- uncultured bacterium 81.1%
- uncultured Acidobacteria bacterium 5.8%
- uncultured Thermaerobacter sp. 2.1%
- metagenome 2.0%
- uncultured delta proteobacterium 1.9%
- uncultured Chloroflexi bacterium 1.6%
- uncultured Rhodocyclaceae bacterium 1.1%
- everything else 4.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.