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SAMN14840305
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
11,819
Reads
315
Observed features
4.534
Shannon
0.788
Evenness
315
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13548, 4.61029
- Platforms
- Illumina MiSeq
Runs
SRR11698162
Per-run QC
- 16S identity
- 90.3%
- Q30
- 84.1%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4445 · Candidatus Solibacter 1,050 (8.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 35.6%
- Pseudomonadota 27.0%
- Gemmatimonadota 6.3%
- Chloroflexota 4.8%
- Myxococcota 4.7%
- Bacteroidota 3.8%
- Nitrospirota 3.7%
- everything else 14.1%
- Acidobacteriae 25.2%
- Gammaproteobacteria 20.9%
- Gemmatimonadia 6.3%
- Alphaproteobacteria 6.1%
- Polyangiia 4.1%
- Bacteroidia 3.8%
- Nitrospiria 3.7%
- everything else 29.9%
- Burkholderiales 17.2%
- Terriglobales 10.6%
- Solibacterales 9.6%
- Gemmatimonadales 6.3%
- Incertae Sedis 5.9%
- Bryobacterales 4.7%
- Nitrospirales 3.7%
- everything else 41.9%
- Incertae Sedis 27.2%
- Nitrosomonadaceae 12.5%
- Solibacteraceae 9.6%
- Gemmatimonadaceae 6.3%
- Bryobacteraceae 4.7%
- Nitrospiraceae 3.7%
- Geobacteraceae 2.6%
- everything else 33.4%
- Incertae Sedis 49.7%
- Candidatus Solibacter 9.6%
- GOUTA6 7.6%
- Bryobacter 4.5%
- Nitrospira 3.7%
- MND1 2.9%
- CL500-29 marine group 2.4%
- everything else 19.7%
- uncultured bacterium 75.6%
- uncultured Acidobacteria bacterium 6.8%
- metagenome 4.2%
- uncultured beta proteobacterium 2.1%
- freshwater sediment metagenome 1.8%
- uncultured delta proteobacterium 1.0%
- uncultured Desulfuromonadales bacterium 0.9%
- everything else 7.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.