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SAMN14840310
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
10,568
Reads
303
Observed features
4.721
Shannon
0.826
Evenness
303
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13557, 4.61042
- Platforms
- Illumina MiSeq
Runs
SRR11698157
Per-run QC
- 16S identity
- 91.0%
- Q30
- 83.3%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 40.8%
- Pseudomonadota 24.7%
- Verrucomicrobiota 10.2%
- Bacteroidota 4.7%
- Myxococcota 4.3%
- Gemmatimonadota 3.9%
- Nitrospirota 3.5%
- everything else 7.9%
- Acidobacteriae 36.7%
- Gammaproteobacteria 20.3%
- Verrucomicrobiia 10.2%
- Bacteroidia 4.7%
- Alphaproteobacteria 4.4%
- Gemmatimonadia 3.9%
- Polyangiia 3.2%
- everything else 16.6%
- Burkholderiales 16.5%
- Terriglobales 15.8%
- Bryobacterales 8.7%
- Pedosphaerales 8.0%
- Solibacterales 7.1%
- Subgroup 2 4.7%
- Incertae Sedis 4.2%
- everything else 35.0%
- Incertae Sedis 25.0%
- Bryobacteraceae 8.7%
- Nitrosomonadaceae 8.4%
- Pedosphaeraceae 8.0%
- Solibacteraceae 7.1%
- Gemmatimonadaceae 3.9%
- Acidobacteriaceae (Subgroup 1) 3.7%
- everything else 35.2%
- Incertae Sedis 48.2%
- Candidatus Solibacter 7.1%
- Bryobacter 7.0%
- MND1 5.3%
- Candidatus Koribacter 2.5%
- Ellin516 2.2%
- Thiobacillus 2.2%
- everything else 25.4%
- uncultured bacterium 73.8%
- uncultured Acidobacteria bacterium 8.3%
- uncultured prokaryote 2.4%
- uncultured delta proteobacterium 2.4%
- uncultured forest soil bacterium 1.5%
- uncultured Comamonadaceae bacterium 1.2%
- uncultured Rhodocyclaceae bacterium 1.1%
- everything else 9.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.