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SAMN14840308
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
13,121
Reads
331
Observed features
4.839
Shannon
0.834
Evenness
331
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13557, 4.61042
- Platforms
- Illumina MiSeq
Runs
SRR11698159
Per-run QC
- 16S identity
- 90.9%
- Q30
- 84.5%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1112 · Candidatus Udaeobacter 119 (0.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 36.0%
- Pseudomonadota 28.8%
- Verrucomicrobiota 11.3%
- Bacteroidota 5.1%
- Myxococcota 4.8%
- Gemmatimonadota 3.6%
- Nitrospirota 3.4%
- everything else 7.1%
- Acidobacteriae 31.8%
- Gammaproteobacteria 22.1%
- Verrucomicrobiia 11.3%
- Alphaproteobacteria 6.7%
- Bacteroidia 5.1%
- Polyangiia 3.8%
- Gemmatimonadia 3.6%
- everything else 15.5%
- Burkholderiales 17.7%
- Terriglobales 16.1%
- Pedosphaerales 8.5%
- Solibacterales 7.1%
- Bryobacterales 5.7%
- Incertae Sedis 3.8%
- Gemmatimonadales 3.6%
- everything else 37.5%
- Incertae Sedis 22.1%
- Nitrosomonadaceae 9.3%
- Pedosphaeraceae 8.5%
- Solibacteraceae 7.1%
- Bryobacteraceae 5.7%
- Acidobacteriaceae (Subgroup 1) 3.6%
- Gemmatimonadaceae 3.6%
- everything else 40.0%
- Incertae Sedis 44.9%
- Candidatus Solibacter 7.1%
- MND1 6.2%
- Bryobacter 4.2%
- Occallatibacter 3.5%
- Ellin516 3.1%
- Candidatus Koribacter 2.9%
- everything else 28.1%
- uncultured bacterium 72.4%
- uncultured Acidobacteria bacterium 9.7%
- metagenome 2.0%
- uncultured prokaryote 2.0%
- uncultured delta proteobacterium 1.8%
- uncultured beta proteobacterium 1.2%
- uncultured proteobacterium 1.1%
- everything else 9.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 80% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 80% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 79% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.