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SAMN14840309
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
10,576
Reads
160
Observed features
4.43
Shannon
0.873
Evenness
160
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13557, 4.61042
- Platforms
- Illumina MiSeq
Runs
SRR11698158
Per-run QC
- 16S identity
- 90.3%
- Q30
- 83.9%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1112 · Candidatus Udaeobacter 128 (1.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 41.0%
- Pseudomonadota 23.1%
- Verrucomicrobiota 10.2%
- Bacteroidota 6.3%
- Gemmatimonadota 5.1%
- Myxococcota 4.7%
- Nitrospirota 3.8%
- everything else 5.8%
- Acidobacteriae 35.5%
- Gammaproteobacteria 15.7%
- Verrucomicrobiia 10.2%
- Alphaproteobacteria 7.4%
- Bacteroidia 6.3%
- Gemmatimonadia 4.8%
- Holophagae 4.1%
- everything else 16.0%
- Terriglobales 17.5%
- Burkholderiales 12.8%
- Bryobacterales 8.0%
- Pedosphaerales 7.5%
- Solibacterales 6.6%
- Gemmatimonadales 4.8%
- Subgroup 7 3.8%
- everything else 39.0%
- Incertae Sedis 24.1%
- Bryobacteraceae 8.0%
- Pedosphaeraceae 7.5%
- Solibacteraceae 6.6%
- Nitrosomonadaceae 4.9%
- Gemmatimonadaceae 4.8%
- Acidobacteriaceae (Subgroup 1) 3.9%
- everything else 40.2%
- Incertae Sedis 44.7%
- Bryobacter 6.9%
- Candidatus Solibacter 6.6%
- Candidatus Koribacter 3.3%
- Ellin516 3.2%
- Gemmatimonas 2.8%
- Occallatibacter 2.5%
- everything else 30.0%
- uncultured bacterium 63.0%
- uncultured Acidobacteria bacterium 11.2%
- uncultured forest soil bacterium 7.1%
- uncultured delta proteobacterium 2.2%
- uncultured prokaryote 2.0%
- uncultured Alphaproteobacteria bacterium 1.8%
- uncultured Nitrospirae bacterium 1.7%
- everything else 11.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 80% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.