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SAMN14840313
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
11,922
Reads
248
Observed features
4.767
Shannon
0.865
Evenness
248
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13566, 4.61055
- Platforms
- Illumina MiSeq
Runs
SRR11698153
Per-run QC
- 16S identity
- 91.1%
- Q30
- 84.4%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 29.6%
- Acidobacteriota 28.6%
- Verrucomicrobiota 10.3%
- Bacteroidota 9.6%
- Actinomycetota 7.6%
- Myxococcota 3.8%
- Chloroflexota 3.1%
- everything else 7.5%
- Acidobacteriae 21.7%
- Gammaproteobacteria 14.9%
- Alphaproteobacteria 14.7%
- Verrucomicrobiia 10.3%
- Bacteroidia 9.6%
- Vicinamibacteria 4.6%
- Actinobacteria 4.0%
- everything else 20.2%
- Burkholderiales 9.3%
- Terriglobales 9.2%
- Hyphomicrobiales 9.0%
- Solibacterales 5.6%
- Pedosphaerales 5.0%
- Vicinamibacterales 4.5%
- Incertae Sedis 4.3%
- everything else 53.0%
- Incertae Sedis 24.9%
- Xanthobacteraceae 7.4%
- Solibacteraceae 5.6%
- Pedosphaeraceae 5.0%
- Chitinophagaceae 3.8%
- Koribacteraceae 3.7%
- Chthoniobacteraceae 3.5%
- everything else 46.0%
- Incertae Sedis 47.7%
- Candidatus Solibacter 5.6%
- Candidatus Koribacter 3.7%
- Candidatus Udaeobacter 3.5%
- Bradyrhizobium 3.4%
- Bryobacter 2.9%
- Acidothermus 2.4%
- everything else 30.7%
- uncultured bacterium 55.3%
- uncultured Acidobacteria bacterium 15.4%
- uncultured Verrucomicrobia bacterium 3.7%
- Bradyrhizobium elkanii 3.4%
- metagenome 3.0%
- uncultured Verrucomicrobia subdivision 3 bacterium 2.2%
- uncultured forest soil bacterium 1.7%
- everything else 15.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 85% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.