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SAMN14840312
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
8,648
Reads
225
Observed features
4.649
Shannon
0.858
Evenness
225
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13566, 4.61055
- Platforms
- Illumina MiSeq
Runs
SRR11698155
Per-run QC
- 16S identity
- 91.0%
- Q30
- 84.3%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 33.5%
- Acidobacteriota 27.3%
- Actinomycetota 9.8%
- Bacteroidota 7.8%
- Verrucomicrobiota 7.3%
- Myxococcota 4.5%
- Chloroflexota 2.5%
- everything else 7.2%
- Alphaproteobacteria 19.7%
- Acidobacteriae 19.0%
- Gammaproteobacteria 13.8%
- Bacteroidia 7.8%
- Verrucomicrobiia 7.3%
- Vicinamibacteria 4.6%
- Thermoleophilia 4.4%
- everything else 23.3%
- Hyphomicrobiales 14.3%
- Burkholderiales 9.8%
- Terriglobales 8.8%
- Incertae Sedis 7.0%
- Solibacterales 5.7%
- Vicinamibacterales 4.5%
- Chthoniobacterales 4.3%
- everything else 45.8%
- Incertae Sedis 25.1%
- Xanthobacteraceae 10.8%
- Solibacteraceae 5.7%
- Chthoniobacteraceae 3.9%
- Nitrosomonadaceae 3.8%
- Chitinophagaceae 3.2%
- Pedosphaeraceae 2.9%
- everything else 44.7%
- Incertae Sedis 52.7%
- Candidatus Solibacter 5.7%
- Afipia 3.9%
- Candidatus Udaeobacter 3.8%
- Candidatus Koribacter 2.4%
- ADurb.Bin063-1 2.1%
- Flavobacterium 1.9%
- everything else 27.6%
- uncultured bacterium 65.2%
- uncultured Acidobacteria bacterium 7.0%
- unidentified 5.6%
- metagenome 4.2%
- iron-reducing bacterium enrichment culture clone FEA_2_G2 3.9%
- uncultured Actinoallomurus sp. 1.8%
- bacterium Ellin5102 1.8%
- everything else 10.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 82% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.