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SAMN14840319
MIMARKS Survey related sample from soil metagenome
- 1 run(s)
- Illumina MiSeq
- V3-V4
- present
- 0-10cm
derived from this sample's metadata and per-run QC
10,725
Reads
231
Observed features
4.542
Shannon
0.835
Evenness
231
Chao1
Where and when
- Collected
- 2007-06-07
- Depth
- 0-10cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 51.13531, 4.61159
- Platforms
- Illumina MiSeq
Runs
SRR11698147
Per-run QC
- 16S identity
- 90.8%
- Q30
- 82.6%
- Region
- V3-V4
- Read length
- 301 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1112 · Candidatus Udaeobacter 335 (3.1%)
- ASV_3334 · Rhodanobacter 295 (2.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Acidobacteriota 32.8%
- Pseudomonadota 32.6%
- Actinomycetota 9.2%
- Bacteroidota 7.5%
- Verrucomicrobiota 7.0%
- Myxococcota 2.9%
- Gemmatimonadota 1.7%
- everything else 6.4%
- Acidobacteriae 24.5%
- Alphaproteobacteria 16.4%
- Gammaproteobacteria 16.2%
- Bacteroidia 7.5%
- Verrucomicrobiia 7.0%
- Actinobacteria 5.1%
- Vicinamibacteria 3.7%
- everything else 19.6%
- Burkholderiales 11.7%
- Terriglobales 11.6%
- Hyphomicrobiales 8.7%
- Solibacterales 8.6%
- Chthoniobacterales 4.2%
- Chitinophagales 4.0%
- Frankiales 3.8%
- everything else 47.4%
- Incertae Sedis 20.1%
- Solibacteraceae 8.6%
- Xanthobacteraceae 6.8%
- Oxalobacteraceae 4.3%
- Chthoniobacteraceae 4.2%
- Chitinophagaceae 4.0%
- Acidothermaceae 3.8%
- everything else 48.2%
- Incertae Sedis 45.1%
- Candidatus Solibacter 8.6%
- Massilia 4.3%
- Candidatus Udaeobacter 4.2%
- Acidothermus 3.8%
- Bryobacter 3.3%
- Bradyrhizobium 2.8%
- everything else 27.9%
- uncultured bacterium 68.9%
- uncultured Acidobacteria bacterium 5.7%
- uncultured Verrucomicrobia bacterium 4.2%
- uncultured Alphaproteobacteria bacterium 3.6%
- Oxalobacteraceae bacterium HRT30 3.5%
- Bradyrhizobium elkanii 2.8%
- bacterium Ellin5102 1.9%
- everything else 9.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 88% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 81% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 80% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
- composition 79% similar (genus)
- same collection date
- shared: 0-10cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630593-20260926/.