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SAMN15375003
Mount Seuss 4
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
52,217
Reads
571
Observed features
6.034
Shannon
0.951
Evenness
571
Chao1
Where and when
- Collected
- 2015-01-14
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -77.0138, 161.428
- Platforms
- Illumina MiSeq
Runs
SRR12095379
Per-run QC
- 16S identity
- 97.4%
- Q30
- 94.9%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 103 (0.2%)
- ASV_1112 · Blastocatella 66 (0.1%)
- ASV_2223 · Candidatus Udaeobacter 60 (0.1%)
- ASV_3334 · Sphingomonas 58 (0.1%)
- ASV_4216 · Candidatus Udaeobacter 63 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Acidobacteriota 20.7%
- Pseudomonadota 16.9%
- Actinomycetota 14.8%
- Bacteroidota 10.6%
- Planctomycetota 10.4%
- Gemmatimonadota 7.5%
- Verrucomicrobiota 4.8%
- everything else 14.3%
- Blastocatellia 18.1%
- Alphaproteobacteria 13.2%
- Bacteroidia 10.6%
- Phycisphaerae 6.2%
- Gemmatimonadia 5.1%
- Thermoleophilia 5.0%
- Verrucomicrobiia 4.8%
- everything else 36.9%
- Blastocatellales 11.6%
- Sphingomonadales 11.0%
- Pyrinomonadales 6.5%
- Tepidisphaerales 6.1%
- Chitinophagales 5.8%
- Gemmatimonadales 5.1%
- Chthoniobacterales 4.7%
- everything else 49.2%
- Incertae Sedis 14.0%
- Blastocatellaceae 11.6%
- Sphingomonadaceae 11.0%
- Pyrinomonadaceae 6.5%
- WD2101 soil group 6.0%
- Gemmatimonadaceae 5.1%
- Chitinophagaceae 4.9%
- everything else 41.0%
- Incertae Sedis 46.8%
- Blastocatella 10.3%
- Sphingomonas 10.0%
- Candidatus Udaeobacter 4.7%
- Abditibacterium 2.8%
- Brevitalea 1.8%
- Gaiella 1.8%
- everything else 21.7%
- uncultured bacterium 77.2%
- uncultured Acidobacteria bacterium 2.8%
- uncultured organism 2.8%
- uncultured Planctomycetia bacterium 2.1%
- uncultured Alphaproteobacteria bacterium 1.9%
- uncultured planctomycete 1.8%
- uncultured Gemmatimonadetes bacterium 1.3%
- everything else 10.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 83% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 83% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 80% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.