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SAMN15375013
Towle Glacier 2
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
64,977
Reads
642
Observed features
6.201
Shannon
0.959
Evenness
642
Chao1
Where and when
- Collected
- 2015-01-19
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.4373, 161.007
- Platforms
- Illumina MiSeq
Runs
SRR12095377
Per-run QC
- 16S identity
- 97.3%
- Q30
- 95.1%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 83 (0.1%)
- ASV_1112 · Blastocatella 99 (0.2%)
- ASV_2223 · Candidatus Udaeobacter 380 (0.6%)
- ASV_3334 · Sphingomonas 135 (0.2%)
- ASV_4216 · Candidatus Udaeobacter 60 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Actinomycetota 23.1%
- Acidobacteriota 19.1%
- Pseudomonadota 16.7%
- Bacteroidota 9.8%
- Planctomycetota 8.0%
- Chloroflexota 6.7%
- Verrucomicrobiota 4.7%
- everything else 11.9%
- Blastocatellia 16.3%
- Alphaproteobacteria 12.1%
- Actinobacteria 10.0%
- Bacteroidia 9.8%
- Thermoleophilia 6.8%
- Phycisphaerae 5.9%
- Acidimicrobiia 4.9%
- everything else 34.2%
- Blastocatellales 13.7%
- Sphingomonadales 10.8%
- Chitinophagales 6.9%
- Tepidisphaerales 5.8%
- Propionibacteriales 5.1%
- Solirubrobacterales 4.9%
- Incertae Sedis 4.0%
- everything else 48.8%
- Blastocatellaceae 13.7%
- Sphingomonadaceae 10.8%
- Incertae Sedis 10.6%
- Chitinophagaceae 6.1%
- WD2101 soil group 5.8%
- Nocardioidaceae 5.1%
- Abditibacteriaceae 4.0%
- everything else 44.0%
- Incertae Sedis 38.1%
- Blastocatella 12.2%
- Sphingomonas 9.3%
- Nocardioides 4.2%
- Abditibacterium 4.0%
- Flavisolibacter 3.3%
- Candidatus Udaeobacter 2.9%
- everything else 26.2%
- uncultured bacterium 73.5%
- uncultured Acidobacteria bacterium 4.2%
- uncultured organism 2.7%
- uncultured actinobacterium 2.5%
- uncultured Planctomycetia bacterium 2.2%
- uncultured planctomycete 1.5%
- uncultured soil bacterium 1.4%
- everything else 12.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 84% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 83% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 83% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.