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SAMN15375004
Mount Seuss 5
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
31,103
Reads
388
Observed features
5.567
Shannon
0.934
Evenness
388
Chao1
Where and when
- Collected
- 2015-01-14
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -77.0157, 161.405
- Platforms
- Illumina MiSeq
Runs
SRR12095378
Per-run QC
- 16S identity
- 96.3%
- Q30
- 94.9%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 72 (0.2%)
- ASV_1112 · Blastocatella 43 (0.1%)
- ASV_2223 · Candidatus Udaeobacter 43 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Acidobacteriota 25.8%
- Pseudomonadota 20.6%
- Bacteroidota 11.0%
- Actinomycetota 10.1%
- Verrucomicrobiota 7.4%
- Planctomycetota 6.8%
- Gemmatimonadota 5.5%
- everything else 12.8%
- Blastocatellia 22.3%
- Alphaproteobacteria 13.7%
- Bacteroidia 11.0%
- Verrucomicrobiia 7.4%
- Gammaproteobacteria 6.9%
- Phycisphaerae 4.2%
- Gemmatimonadia 3.6%
- everything else 30.8%
- Blastocatellales 16.4%
- Sphingomonadales 11.3%
- Chthoniobacterales 6.7%
- Chitinophagales 6.6%
- Pyrinomonadales 5.9%
- Tepidisphaerales 4.2%
- Gemmatimonadales 3.6%
- everything else 45.3%
- Blastocatellaceae 16.4%
- Incertae Sedis 12.7%
- Sphingomonadaceae 11.3%
- Chthoniobacteraceae 6.7%
- Pyrinomonadaceae 5.9%
- Chitinophagaceae 5.8%
- WD2101 soil group 3.8%
- everything else 37.4%
- Incertae Sedis 39.7%
- Blastocatella 14.2%
- Sphingomonas 9.4%
- Candidatus Udaeobacter 6.4%
- Flavisolibacter 3.3%
- Lysobacter 2.4%
- JGI 0001001-H03 1.8%
- everything else 22.9%
- uncultured bacterium 72.2%
- uncultured organism 3.0%
- uncultured Acidobacteria bacterium 2.5%
- uncultured proteobacterium 2.1%
- metagenome 2.1%
- uncultured Alphaproteobacteria bacterium 1.9%
- uncultured actinobacterium 1.6%
- everything else 14.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 87% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 85% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 82% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.