opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN15375006
Mount Seuss 7
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
13,709
Reads
156
Observed features
4.652
Shannon
0.921
Evenness
156
Chao1
Where and when
- Collected
- 2015-01-17
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -77.0148, 161.456
- Platforms
- Illumina MiSeq
Runs
SRR12095370
Per-run QC
- 16S identity
- 97.3%
- Q30
- 94.1%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_2223 · Candidatus Udaeobacter 353 (2.6%)
- ASV_3334 · Sphingomonas 216 (1.6%)
- ASV_4216 · Candidatus Udaeobacter 82 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 21.5%
- Acidobacteriota 19.1%
- Actinomycetota 14.2%
- Planctomycetota 13.8%
- Bacteroidota 12.6%
- Gemmatimonadota 6.6%
- Verrucomicrobiota 4.5%
- everything else 7.6%
- Alphaproteobacteria 19.5%
- Blastocatellia 14.6%
- Bacteroidia 12.6%
- Phycisphaerae 8.8%
- Actinobacteria 5.2%
- Planctomycetes 5.0%
- Verrucomicrobiia 4.5%
- everything else 29.8%
- Sphingomonadales 18.7%
- Blastocatellales 10.0%
- Tepidisphaerales 8.8%
- Chitinophagales 5.9%
- Cytophagales 5.9%
- Pyrinomonadales 4.5%
- Gemmatimonadales 4.5%
- everything else 41.7%
- Sphingomonadaceae 18.7%
- Incertae Sedis 14.2%
- Blastocatellaceae 10.0%
- WD2101 soil group 8.4%
- Chitinophagaceae 5.7%
- Hymenobacteraceae 4.9%
- Pyrinomonadaceae 4.5%
- everything else 33.6%
- Incertae Sedis 47.2%
- Sphingomonas 17.6%
- Blastocatella 9.1%
- Candidatus Udaeobacter 4.3%
- Hymenobacter 3.6%
- Segetibacter 2.1%
- Flavisolibacter 1.7%
- everything else 14.4%
- uncultured bacterium 70.2%
- uncultured Acidobacteria bacterium 3.6%
- uncultured planctomycete 3.5%
- uncultured Planctomycetia bacterium 3.4%
- uncultured organism 3.4%
- uncultivated soil bacterium clone S023 2.3%
- uncultured Alphaproteobacteria bacterium 2.2%
- everything else 11.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 79% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 79% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 77% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 77% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.