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SAMN15375005
Mount Seuss 6
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
14,582
Reads
202
Observed features
4.956
Shannon
0.934
Evenness
202
Chao1
Where and when
- Collected
- 2015-01-16
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -77.011, 161.426
- Platforms
- Illumina MiSeq
Runs
SRR12095371
Per-run QC
- 16S identity
- 93.5%
- Q30
- 94.3%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1112 · Blastocatella 182 (1.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Bacteroidota 25.1%
- Acidobacteriota 19.9%
- Pseudomonadota 16.6%
- Gemmatimonadota 9.4%
- Verrucomicrobiota 7.1%
- Planctomycetota 5.9%
- Actinomycetota 3.9%
- everything else 12.3%
- Bacteroidia 25.1%
- Blastocatellia 18.3%
- Gammaproteobacteria 9.2%
- Alphaproteobacteria 7.4%
- Verrucomicrobiia 7.1%
- Longimicrobiia 5.8%
- Planctomycetes 3.2%
- everything else 24.0%
- Blastocatellales 14.7%
- Cytophagales 12.4%
- Chitinophagales 8.4%
- Burkholderiales 7.0%
- Sphingomonadales 5.8%
- Longimicrobiales 5.8%
- Chthoniobacterales 5.4%
- everything else 40.5%
- Blastocatellaceae 14.7%
- Incertae Sedis 7.7%
- Chitinophagaceae 6.9%
- MWH-CFBk5 6.4%
- Sphingomonadaceae 5.8%
- Longimicrobiaceae 5.8%
- Chthoniobacteraceae 5.4%
- everything else 47.2%
- Incertae Sedis 43.1%
- Blastocatella 13.7%
- Candidatus Udaeobacter 5.4%
- Sphingomonas 5.1%
- Flavisolibacter 4.5%
- Flavobacterium 1.6%
- Lysobacter 1.4%
- everything else 25.1%
- uncultured bacterium 67.7%
- uncultured Acidobacteria bacterium 3.8%
- uncultured Flavisolibacter sp. 3.4%
- uncultured Bacteroidetes bacterium 2.8%
- metagenome 2.7%
- uncultured Xiphinematobacteriaceae bacterium 2.5%
- uncultured organism 2.4%
- everything else 14.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 83% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 83% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 81% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 79% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.