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SAMN15375011
Mount Gran 2
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
20,992
Reads
291
Observed features
5.274
Shannon
0.93
Evenness
291
Chao1
Where and when
- Collected
- 2015-01-17
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.5713, 161.243
- Platforms
- Illumina MiSeq
Runs
SRR12095365
Per-run QC
- 16S identity
- 93.7%
- Q30
- 94.5%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 109 (0.5%)
- ASV_2223 · Candidatus Udaeobacter 66 (0.3%)
- ASV_3334 · Sphingomonas 304 (1.4%)
- ASV_4216 · Candidatus Udaeobacter 103 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Acidobacteriota 23.9%
- Pseudomonadota 18.4%
- Verrucomicrobiota 11.3%
- Bacteroidota 9.9%
- Actinomycetota 7.5%
- Myxococcota 7.0%
- Planctomycetota 6.6%
- everything else 15.4%
- Blastocatellia 19.0%
- Gammaproteobacteria 12.7%
- Verrucomicrobiia 11.3%
- Bacteroidia 9.9%
- Polyangiia 5.9%
- Alphaproteobacteria 5.7%
- Gemmatimonadia 5.5%
- everything else 30.0%
- Burkholderiales 11.0%
- Blastocatellales 10.1%
- Chthoniobacterales 9.5%
- Pyrinomonadales 8.9%
- Chitinophagales 6.3%
- Gemmatimonadales 5.5%
- Sphingomonadales 4.5%
- everything else 44.2%
- Incertae Sedis 16.1%
- Blastocatellaceae 10.1%
- Chthoniobacteraceae 9.5%
- Pyrinomonadaceae 8.9%
- Chitinophagaceae 5.9%
- Gemmatimonadaceae 5.5%
- Comamonadaceae 5.4%
- everything else 38.6%
- Incertae Sedis 50.1%
- Candidatus Udaeobacter 7.5%
- Blastocatella 6.6%
- Sphingomonas 4.2%
- Acidovorax 3.4%
- Noviherbaspirillum 2.9%
- Stenotrophobacter 2.7%
- everything else 22.5%
- uncultured bacterium 75.4%
- uncultured Acidobacteria bacterium 4.0%
- metagenome 2.3%
- uncultured Comamonadaceae bacterium 2.0%
- uncultured Xylophilus sp. 1.8%
- uncultured soil bacterium 1.8%
- uncultured Acidovorax sp. 1.6%
- everything else 11.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 80% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 78% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 77% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 76% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 74% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.