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SAMN15375016
Spalding Pond
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
10,102
Reads
142
Observed features
4.588
Shannon
0.926
Evenness
142
Chao1
Where and when
- Collected
- 2015-01-22
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -77.65, 163.116
- Platforms
- Illumina MiSeq
Runs
SRR12095374
Per-run QC
- 16S identity
- 96.9%
- Q30
- 94.2%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Actinomycetota 31.0%
- Acidobacteriota 18.8%
- Pseudomonadota 14.1%
- Bacteroidota 12.6%
- Planctomycetota 5.4%
- Gemmatimonadota 4.7%
- Chloroflexota 4.6%
- everything else 8.9%
- Blastocatellia 16.7%
- Actinobacteria 16.3%
- Bacteroidia 12.6%
- Alphaproteobacteria 11.6%
- Thermoleophilia 7.8%
- Acidimicrobiia 5.4%
- Longimicrobiia 3.6%
- everything else 26.1%
- Blastocatellales 16.7%
- Sphingomonadales 9.9%
- Solirubrobacterales 7.8%
- Cytophagales 6.6%
- Pseudonocardiales 6.3%
- Chitinophagales 5.3%
- Longimicrobiales 3.6%
- everything else 43.8%
- Blastocatellaceae 16.7%
- Sphingomonadaceae 9.9%
- Incertae Sedis 7.1%
- Pseudonocardiaceae 6.3%
- Chitinophagaceae 5.3%
- 67-14 4.3%
- Longimicrobiaceae 3.6%
- everything else 46.8%
- Incertae Sedis 36.0%
- Blastocatella 16.7%
- Sphingomonas 9.0%
- Crossiella 5.7%
- Flavisolibacter 3.1%
- Candidatus Udaeobacter 2.5%
- Phormidesmis ANT.LACV5.1 1.8%
- everything else 25.2%
- uncultured bacterium 70.4%
- uncultured Pseudonocardia sp. 5.2%
- uncultured actinobacterium 4.8%
- uncultured organism 4.7%
- metagenome 1.7%
- uncultured forest soil bacterium 1.3%
- uncultured planctomycete 1.1%
- everything else 10.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 85% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 84% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 81% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 80% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 77% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.