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SAMN15375015
Benson Glacier
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
15,626
Reads
200
Observed features
4.983
Shannon
0.941
Evenness
200
Chao1
Where and when
- Collected
- 2015-01-19
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.52, 161.45
- Platforms
- Illumina MiSeq
Runs
SRR12095375
Per-run QC
- 16S identity
- 96.7%
- Q30
- 94.6%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 158 (1.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.4%
- Acidobacteriota 21.0%
- Pseudomonadota 19.5%
- Bacteroidota 19.3%
- Actinomycetota 8.2%
- Planctomycetota 6.5%
- Bdellovibrionota 6.1%
- Verrucomicrobiota 4.7%
- everything else 14.8%
- Blastocatellia 19.7%
- Bacteroidia 19.3%
- Alphaproteobacteria 11.9%
- Gammaproteobacteria 7.6%
- Actinobacteria 6.0%
- Phycisphaerae 4.7%
- Verrucomicrobiia 4.7%
- everything else 26.1%
- Blastocatellales 15.4%
- Sphingomonadales 10.3%
- Chitinophagales 7.8%
- Sphingobacteriales 5.0%
- Flavobacteriales 5.0%
- Tepidisphaerales 4.7%
- Pyrinomonadales 4.4%
- everything else 47.5%
- Blastocatellaceae 15.4%
- Sphingomonadaceae 10.3%
- Chitinophagaceae 7.5%
- Incertae Sedis 5.0%
- Flavobacteriaceae 4.6%
- Pyrinomonadaceae 4.4%
- WD2101 soil group 4.3%
- everything else 48.6%
- Incertae Sedis 32.0%
- Blastocatella 14.8%
- Sphingomonas 8.5%
- Flavobacterium 4.6%
- Lysobacter 3.6%
- Flavisolibacter 3.5%
- Pseudarthrobacter 3.4%
- everything else 29.6%
- uncultured bacterium 70.7%
- uncultured Bacteroidetes bacterium 5.2%
- metagenome 3.9%
- Pseudarthrobacter polychromogenes 2.9%
- uncultured Acidobacteria bacterium 2.8%
- uncultured Xylophilus sp. 2.2%
- uncultured Planctomycetia bacterium 1.7%
- everything else 10.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 82% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 80% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 79% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 78% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 69% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.