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SAMN15375012
Towle Glacier 1
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
26,239
Reads
322
Observed features
5.494
Shannon
0.951
Evenness
322
Chao1
Where and when
- Collected
- 2015-01-19
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.3928, 161.056
- Platforms
- Illumina MiSeq
Runs
SRR12095364
Per-run QC
- 16S identity
- 93.9%
- Q30
- 95.0%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 90 (0.3%)
- ASV_1112 · Blastocatella 42 (0.2%)
- ASV_2223 · Candidatus Udaeobacter 157 (0.6%)
- ASV_4216 · Candidatus Udaeobacter 43 (0.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Acidobacteriota 33.3%
- Actinomycetota 24.2%
- Bacteroidota 9.8%
- Pseudomonadota 8.7%
- Verrucomicrobiota 7.5%
- Chloroflexota 6.7%
- Abditibacteriota 3.3%
- everything else 6.6%
- Blastocatellia 31.6%
- Actinobacteria 10.4%
- Thermoleophilia 10.2%
- Bacteroidia 9.8%
- Verrucomicrobiia 7.5%
- Alphaproteobacteria 6.6%
- KD4-96 4.0%
- everything else 19.8%
- Blastocatellales 19.4%
- Pyrinomonadales 12.2%
- Chitinophagales 8.4%
- Chthoniobacterales 7.4%
- Incertae Sedis 6.4%
- Solirubrobacterales 5.5%
- Sphingomonadales 5.4%
- everything else 35.3%
- Blastocatellaceae 19.4%
- Incertae Sedis 13.8%
- Pyrinomonadaceae 12.2%
- Chitinophagaceae 7.7%
- Chthoniobacteraceae 7.4%
- Sphingomonadaceae 5.4%
- Solirubrobacteraceae 5.2%
- everything else 28.8%
- Incertae Sedis 37.9%
- Blastocatella 19.4%
- Candidatus Udaeobacter 7.0%
- Nocardioides 4.9%
- Sphingomonas 4.8%
- Solirubrobacter 3.4%
- Abditibacterium 3.3%
- everything else 19.3%
- uncultured bacterium 80.8%
- uncultured actinobacterium 3.9%
- uncultured Acidobacteria bacterium 2.5%
- metagenome 2.3%
- uncultured organism 2.1%
- uncultured soil bacterium 1.6%
- Marmoricola sp. 0.8%
- everything else 5.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 80% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 79% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 77% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.