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SAMN15375007
Mackay Glacier 1
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
21,978
Reads
269
Observed features
5.252
Shannon
0.939
Evenness
269
Chao1
Where and when
- Collected
- 2015-01-11
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.4701, 161.27
- Platforms
- Illumina MiSeq
Runs
SRR12095369
Per-run QC
- 16S identity
- 97.7%
- Q30
- 94.7%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 49 (0.2%)
- ASV_1112 · Blastocatella 446 (2.0%)
- ASV_3334 · Sphingomonas 44 (0.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 31.9%
- Acidobacteriota 21.6%
- Bacteroidota 12.0%
- Verrucomicrobiota 9.1%
- Actinomycetota 8.5%
- Gemmatimonadota 4.1%
- Planctomycetota 3.2%
- everything else 9.6%
- Blastocatellia 21.1%
- Alphaproteobacteria 18.6%
- Gammaproteobacteria 13.4%
- Bacteroidia 12.0%
- Verrucomicrobiia 9.1%
- Actinobacteria 5.1%
- Gemmatimonadia 4.1%
- everything else 16.7%
- Blastocatellales 13.9%
- Burkholderiales 12.8%
- Sphingomonadales 12.8%
- Chitinophagales 8.8%
- Chthoniobacterales 8.5%
- Pyrinomonadales 7.2%
- Gemmatimonadales 4.1%
- everything else 31.8%
- Blastocatellaceae 13.9%
- Sphingomonadaceae 12.8%
- Chthoniobacteraceae 8.5%
- Oxalobacteraceae 8.0%
- Chitinophagaceae 7.7%
- Pyrinomonadaceae 7.2%
- Incertae Sedis 5.7%
- everything else 36.3%
- Incertae Sedis 29.5%
- Blastocatella 13.2%
- Candidatus Udaeobacter 8.5%
- Noviherbaspirillum 8.0%
- Sphingomonas 6.4%
- Novosphingobium 3.5%
- Acidovorax 2.9%
- everything else 28.0%
- uncultured bacterium 80.8%
- uncultured Acidobacteria bacterium 3.2%
- metagenome 2.4%
- uncultured Xylophilus sp. 2.2%
- Noviherbaspirillum psychrotolerans 1.9%
- uncultured Verrucomicrobia bacterium 1.5%
- Marmoricola sp. 1.3%
- everything else 6.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 74% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 72% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 72% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 71% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 70% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.