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SAMN15375008
Mackay Glacier 2
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
23,879
Reads
319
Observed features
5.434
Shannon
0.943
Evenness
319
Chao1
Where and when
- Collected
- 2015-01-11
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.4936, 162.064
- Platforms
- Illumina MiSeq
Runs
SRR12095368
Per-run QC
- 16S identity
- 92.1%
- Q30
- 96.8%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 57 (0.2%)
- ASV_1112 · Blastocatella 177 (0.7%)
- ASV_3334 · Sphingomonas 54 (0.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 27.7%
- Acidobacteriota 23.8%
- Bacteroidota 22.3%
- Actinomycetota 5.3%
- Abditibacteriota 4.6%
- Gemmatimonadota 4.4%
- Bdellovibrionota 3.0%
- everything else 8.9%
- Blastocatellia 23.1%
- Bacteroidia 22.3%
- Gammaproteobacteria 15.3%
- Alphaproteobacteria 12.3%
- Abditibacteriia 4.6%
- Longimicrobiia 2.9%
- Actinobacteria 2.5%
- everything else 17.0%
- Blastocatellales 18.1%
- Burkholderiales 13.4%
- Sphingobacteriales 9.7%
- Sphingomonadales 8.2%
- Cytophagales 7.5%
- Pyrinomonadales 5.0%
- Chitinophagales 4.8%
- everything else 33.4%
- Blastocatellaceae 18.1%
- Sphingomonadaceae 8.2%
- Comamonadaceae 7.8%
- Sphingobacteriaceae 6.0%
- Oxalobacteraceae 5.3%
- Pyrinomonadaceae 5.0%
- Hymenobacteraceae 4.8%
- everything else 44.9%
- Incertae Sedis 27.1%
- Blastocatella 17.9%
- Acidovorax 6.5%
- Sphingomonas 4.9%
- Hymenobacter 4.7%
- Abditibacterium 4.6%
- Pedobacter 3.6%
- everything else 30.7%
- uncultured bacterium 59.1%
- metagenome 7.3%
- uncultured Acidovorax sp. 5.8%
- uncultured organism 4.2%
- uncultured Pedobacter sp. 3.6%
- uncultured Acidobacteria bacterium 3.0%
- Hymenobacter sp. 2.7%
- everything else 14.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 71% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 68% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 68% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 67% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 67% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.