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SAMN15375009
Mount Murray
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
52,414
Reads
655
Observed features
6.173
Shannon
0.952
Evenness
655
Chao1
Where and when
- Collected
- 2015-01-19
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.0965, 162.01
- Platforms
- Illumina MiSeq
Runs
SRR12095367
Per-run QC
- 16S identity
- 96.9%
- Q30
- 95.0%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 206 (0.4%)
- ASV_3334 · Sphingomonas 183 (0.3%)
- ASV_4216 · Candidatus Udaeobacter 189 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 31.9%
- Bacteroidota 13.0%
- Acidobacteriota 11.2%
- Planctomycetota 8.5%
- Verrucomicrobiota 7.5%
- Gemmatimonadota 5.0%
- Actinomycetota 4.0%
- everything else 18.9%
- Gammaproteobacteria 25.6%
- Bacteroidia 13.0%
- Blastocatellia 8.4%
- Verrucomicrobiia 7.5%
- Alphaproteobacteria 6.3%
- Gemmatimonadia 5.0%
- Planctomycetes 3.5%
- everything else 30.6%
- Burkholderiales 15.7%
- Chitinophagales 7.0%
- Chthoniobacterales 6.4%
- Pseudomonadales 5.8%
- Gemmatimonadales 5.0%
- Pyrinomonadales 4.5%
- Incertae Sedis 4.3%
- everything else 51.4%
- Incertae Sedis 14.8%
- Oxalobacteraceae 6.9%
- Chitinophagaceae 6.4%
- Chthoniobacteraceae 6.4%
- Pseudomonadaceae 5.8%
- Gemmatimonadaceae 5.0%
- Pyrinomonadaceae 4.5%
- everything else 50.3%
- Incertae Sedis 40.8%
- Pseudomonas 5.8%
- Candidatus Udaeobacter 4.7%
- Noviherbaspirillum 3.2%
- Methylotenera 2.9%
- Blastocatella 2.4%
- Sphingomonas 2.0%
- everything else 38.3%
- uncultured bacterium 65.8%
- metagenome 4.6%
- Pseudomonas sp. PGO22 2.5%
- Pseudomonas mandelii 2.1%
- uncultured soil bacterium 1.5%
- uncultured Methylophilaceae bacterium 1.1%
- uncultured Comamonadaceae bacterium 1.0%
- everything else 21.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 76% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 73% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 71% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 70% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 68% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.