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SAMN15375017
Flatiron
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
30,762
Reads
353
Observed features
5.609
Shannon
0.956
Evenness
353
Chao1
Where and when
- Collected
- 2015-01-11
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -77.0038, 162.238
- Platforms
- Illumina MiSeq
Runs
SRR12095373
Per-run QC
- 16S identity
- 96.7%
- Q30
- 96.6%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Gemmatimonadota 17.0%
- Pseudomonadota 14.8%
- Bacteroidota 14.5%
- Actinomycetota 10.7%
- Verrucomicrobiota 9.9%
- Planctomycetota 8.6%
- Acidobacteriota 5.4%
- everything else 19.1%
- Bacteroidia 14.5%
- Longimicrobiia 13.3%
- Verrucomicrobiia 9.9%
- Alphaproteobacteria 8.3%
- Gammaproteobacteria 6.6%
- Planctomycetes 6.1%
- Actinobacteria 4.8%
- everything else 36.5%
- Longimicrobiales 13.3%
- Sphingobacteriales 6.0%
- Incertae Sedis 5.3%
- Lysobacterales 5.2%
- Cytophagales 4.9%
- Chthoniobacterales 3.5%
- Pirellulales 3.5%
- everything else 58.3%
- Incertae Sedis 13.7%
- Longimicrobiaceae 13.3%
- KD3-93 5.3%
- Lysobacteraceae 5.2%
- Chthoniobacteraceae 3.5%
- Pirellulaceae 3.5%
- Gemmatimonadaceae 3.5%
- everything else 52.0%
- Incertae Sedis 56.4%
- Luteimonas 3.8%
- Candidatus Udaeobacter 3.2%
- Truepera 2.6%
- Luteolibacter 2.5%
- Sphingomonas 1.7%
- Paracoccus 1.6%
- everything else 28.3%
- uncultured bacterium 74.4%
- metagenome 5.5%
- uncultured Planctomycetales bacterium 2.0%
- uncultured Acidobacteria bacterium 1.8%
- uncultured Paracoccus sp. 1.6%
- uncultured Rickettsiales bacterium 1.5%
- planctomycete MSL156 1.4%
- everything else 11.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 74% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 69% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 68% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 66% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 65% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.