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SAMN15375010
Mount Gran 1
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
19,733
Reads
195
Observed features
4.952
Shannon
0.939
Evenness
195
Chao1
Where and when
- Collected
- 2015-01-22
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.5803, 161.097
- Platforms
- Illumina MiSeq
Runs
SRR12095366
Per-run QC
- 16S identity
- 96.7%
- Q30
- 93.8%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_3334 · Sphingomonas 34 (0.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Actinomycetota 42.9%
- Acidobacteriota 12.6%
- Pseudomonadota 12.2%
- Bacteroidota 11.3%
- Chloroflexota 7.5%
- Planctomycetota 5.7%
- Verrucomicrobiota 3.1%
- everything else 4.7%
- Thermoleophilia 19.6%
- Acidimicrobiia 13.3%
- Bacteroidia 11.3%
- Alphaproteobacteria 10.1%
- Blastocatellia 8.8%
- Actinobacteria 8.4%
- Phycisphaerae 4.4%
- everything else 24.0%
- Solirubrobacterales 15.1%
- Sphingomonadales 9.2%
- Chitinophagales 7.1%
- Incertae Sedis 6.9%
- Acidimicrobiales 6.9%
- Blastocatellales 6.7%
- Microtrichales 5.9%
- everything else 42.2%
- Incertae Sedis 18.4%
- Solirubrobacteraceae 11.5%
- Sphingomonadaceae 9.2%
- Chitinophagaceae 7.1%
- Acidimicrobiaceae 6.9%
- Blastocatellaceae 6.7%
- Nocardioidaceae 4.5%
- everything else 35.7%
- Incertae Sedis 45.2%
- Sphingomonas 9.2%
- Acidiferrimicrobium 6.5%
- Blastocatella 5.1%
- Solirubrobacter 5.0%
- Nocardioides 4.4%
- Flavisolibacter 3.4%
- everything else 21.2%
- uncultured bacterium 79.9%
- uncultured actinobacterium 3.8%
- uncultured Bacteroidetes bacterium 3.2%
- uncultured organism 2.0%
- uncultured Acidobacteria bacterium 1.6%
- metagenome 1.4%
- Nocardioides sp. 1.3%
- everything else 6.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 78% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 76% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 74% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 74% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 73% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.