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SAMN15375018
Pegtop Mountain
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
39,392
Reads
366
Observed features
5.647
Shannon
0.957
Evenness
366
Chao1
Where and when
- Collected
- 2015-01-22
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -77.0276, 161.216
- Platforms
- Illumina MiSeq
Runs
SRR12095372
Per-run QC
- 16S identity
- 96.1%
- Q30
- 97.1%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 150 (0.4%)
- ASV_1112 · Blastocatella 85 (0.2%)
- ASV_2223 · Candidatus Udaeobacter 79 (0.2%)
- ASV_4216 · Candidatus Udaeobacter 48 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Actinomycetota 28.9%
- Acidobacteriota 17.8%
- Bacteroidota 11.2%
- Pseudomonadota 7.5%
- Verrucomicrobiota 7.2%
- Chloroflexota 6.9%
- Planctomycetota 4.7%
- everything else 15.8%
- Blastocatellia 16.5%
- Actinobacteria 12.1%
- Thermoleophilia 11.5%
- Bacteroidia 11.2%
- Alphaproteobacteria 7.2%
- Verrucomicrobiia 7.2%
- Chloroflexia 4.6%
- everything else 29.8%
- Blastocatellales 13.0%
- Solirubrobacterales 9.1%
- Chthoniobacterales 7.2%
- Chitinophagales 6.8%
- Propionibacteriales 5.9%
- Frankiales 4.7%
- Cytophagales 4.4%
- everything else 48.9%
- Blastocatellaceae 13.0%
- Incertae Sedis 9.3%
- Solirubrobacteraceae 7.3%
- Chthoniobacteraceae 7.2%
- Chitinophagaceae 5.9%
- Nocardioidaceae 5.8%
- Abditibacteriaceae 4.0%
- everything else 47.5%
- Incertae Sedis 33.4%
- Blastocatella 13.0%
- Candidatus Udaeobacter 7.1%
- Nocardioides 5.1%
- Solirubrobacter 4.3%
- Abditibacterium 4.0%
- Acidiphilium 3.2%
- everything else 29.8%
- uncultured bacterium 82.7%
- uncultured actinobacterium 2.7%
- uncultured Acidobacteria bacterium 1.6%
- uncultured organism 1.5%
- Solirubrobacterales bacterium 1.4%
- metagenome 1.4%
- uncultured Bacteroidetes bacterium 0.9%
- everything else 7.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 79% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 72% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 72% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 70% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.