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SAMN15375014
Cliff Nunatak
- 1 run(s)
- Illumina MiSeq
- V4
- present
- 0 - 5 cm
derived from this sample's metadata and per-run QC
50,818
Reads
527
Observed features
5.973
Shannon
0.953
Evenness
527
Chao1
Where and when
- Collected
- 2015-01-19
- Depth
- 0 - 5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- -76.0663, 162.008
- Platforms
- Illumina MiSeq
Runs
SRR12095376
Per-run QC
- 16S identity
- 97.8%
- Q30
- 95.3%
- Region
- V4
- Read length
- 291 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Blastocatella 103 (0.2%)
- ASV_4216 · Candidatus Udaeobacter 320 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.1%
- Pseudomonadota 21.3%
- Bacteroidota 19.1%
- Acidobacteriota 12.9%
- Armatimonadota 9.5%
- Planctomycetota 6.3%
- Verrucomicrobiota 6.2%
- Chloroflexota 5.3%
- everything else 19.5%
- Bacteroidia 19.1%
- Alphaproteobacteria 11.7%
- Gammaproteobacteria 9.6%
- Blastocatellia 9.1%
- Verrucomicrobiia 6.2%
- Chthonomonadia 5.3%
- Polyangiia 4.5%
- everything else 34.6%
- Chitinophagales 9.4%
- Burkholderiales 8.4%
- Cytophagales 7.9%
- Blastocatellales 6.4%
- Chthoniobacterales 6.0%
- Sphingomonadales 5.4%
- Chthonomonadales 5.3%
- everything else 51.2%
- Chitinophagaceae 9.3%
- Blastocatellaceae 6.4%
- Chthoniobacteraceae 6.0%
- Incertae Sedis 5.7%
- Sphingomonadaceae 5.4%
- Chthonomonadaceae 5.3%
- Acetobacteraceae 4.4%
- everything else 57.4%
- Incertae Sedis 32.9%
- Chthonomonas 5.3%
- Blastocatella 5.2%
- Acidiphilium 4.3%
- Candidatus Udaeobacter 3.8%
- Ferruginibacter 3.6%
- Hymenobacter 3.4%
- everything else 41.4%
- uncultured bacterium 72.2%
- uncultured Bacteroidetes bacterium 3.6%
- metagenome 2.3%
- uncultured Comamonadaceae bacterium 1.8%
- uncultured cyanobacterium 1.3%
- uncultured organism 1.2%
- uncultured Niastella sp. 1.2%
- everything else 16.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 70% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 65% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
- composition 63% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 63% similar (genus)
- shared: 0 - 5 cm, Illumina MiSeq
- composition 62% similar (genus)
- same collection date
- shared: 0 - 5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA630822-20260926/.