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SAMN16294718
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
49,805
Reads
1,014
Observed features
6.161
Shannon
0.89
Evenness
1,014
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.38
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805522
Per-run QC
- 16S identity
- 97.5%
- Q30
- 47.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 20 (0.0%)
- ASV_5956 · Nocardioides 489 (1.0%)
- ASV_7067 · Corallococcus 248 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Actinomycetota 26.1%
- Cyanobacteriota 19.8%
- Pseudomonadota 19.1%
- Bacteroidota 8.6%
- Chloroflexota 7.6%
- Gemmatimonadota 5.3%
- Acidobacteriota 4.4%
- everything else 9.1%
- Cyanobacteriia 19.8%
- Actinobacteria 17.3%
- Alphaproteobacteria 14.6%
- Bacteroidia 8.6%
- Thermoleophilia 6.0%
- Chloroflexia 5.0%
- Gammaproteobacteria 4.4%
- everything else 24.3%
- Cyanobacteriales 16.5%
- Propionibacteriales 6.4%
- Cytophagales 5.9%
- Sphingomonadales 5.1%
- Hyphomicrobiales 4.6%
- Solirubrobacterales 4.2%
- Gemmatimonadales 4.1%
- everything else 53.4%
- Incertae Sedis 9.2%
- Coleofasciculaceae 8.1%
- Nostocaceae 7.3%
- Nocardioidaceae 6.4%
- Sphingomonadaceae 5.1%
- Gemmatimonadaceae 4.1%
- Paracoccaceae 3.3%
- everything else 56.6%
- Incertae Sedis 35.0%
- Nocardioides 6.2%
- Microcoleus SAG 1449-1a 4.5%
- Sphingomonas 4.1%
- Nostoc PCC-73102 3.4%
- Rubellimicrobium 3.2%
- Gemmatimonas 1.8%
- everything else 41.9%
- uncultured bacterium 60.9%
- Nostoc linckia ACSSI 271 2.5%
- uncultured Bacteroidetes bacterium 1.9%
- Persicaria minor 1.5%
- Microcoleus paludosus SAG 1449-1a 1.5%
- Nocardioides sp. 1.2%
- uncultured soil bacterium 1.1%
- everything else 29.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 81% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 70% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 68% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 68% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.