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SAMN16294724
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
52,493
Reads
1,046
Observed features
6.034
Shannon
0.868
Evenness
1,046
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.44
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805499
Per-run QC
- 16S identity
- 96.9%
- Q30
- 52.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 25 (0.0%)
- ASV_5956 · Nocardioides 800 (1.5%)
- ASV_7067 · Corallococcus 1,459 (2.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Actinomycetota 20.5%
- Pseudomonadota 16.8%
- Bacillota 12.1%
- Acidobacteriota 11.2%
- Chloroflexota 10.9%
- Gemmatimonadota 6.7%
- Myxococcota 6.1%
- everything else 15.6%
- Bacilli 11.1%
- Actinobacteria 10.7%
- Gammaproteobacteria 9.6%
- Alphaproteobacteria 7.2%
- Thermoleophilia 5.9%
- Bacteroidia 5.0%
- Gemmatimonadia 4.8%
- everything else 45.6%
- Lactobacillales 10.7%
- Burkholderiales 8.0%
- Propionibacteriales 5.1%
- Gemmatimonadales 4.8%
- Incertae Sedis 4.8%
- Subgroup 7 4.8%
- Solirubrobacterales 4.2%
- everything else 57.5%
- Incertae Sedis 16.9%
- Lactobacillaceae 10.6%
- Nocardioidaceae 5.1%
- Gemmatimonadaceae 4.8%
- Nitrosomonadaceae 4.2%
- Myxococcaceae 3.4%
- Sphingomonadaceae 2.9%
- everything else 52.1%
- Incertae Sedis 41.9%
- Lactobacillus 8.9%
- Nocardioides 4.8%
- Ellin6067 3.3%
- Corallococcus 2.8%
- Sphingomonas 2.6%
- Bryobacter 2.2%
- everything else 33.6%
- uncultured bacterium 59.3%
- Lactobacillus acidophilus 8.6%
- Corallococcus exiguus 2.8%
- uncultured soil bacterium 2.2%
- uncultured Gemmatimonadetes bacterium 1.7%
- Marmoricola sp. 1.6%
- uncultured Acidobacteria bacterium 1.5%
- everything else 22.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 82% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 77% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 77% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.