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SAMN16294723
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
42,135
Reads
902
Observed features
6.081
Shannon
0.894
Evenness
902
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.43
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805500
Per-run QC
- 16S identity
- 96.7%
- Q30
- 51.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_5956 · Nocardioides 742 (1.8%)
- ASV_7067 · Corallococcus 1,330 (3.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Actinomycetota 19.5%
- Pseudomonadota 18.9%
- Chloroflexota 15.3%
- Acidobacteriota 10.3%
- Cyanobacteriota 9.1%
- Gemmatimonadota 7.0%
- Bacteroidota 6.3%
- everything else 13.7%
- Gammaproteobacteria 10.3%
- Actinobacteria 10.1%
- Cyanobacteriia 9.0%
- Alphaproteobacteria 8.6%
- Chloroflexia 8.4%
- Bacteroidia 6.3%
- Thermoleophilia 6.2%
- everything else 41.2%
- Burkholderiales 8.8%
- Chloroflexales 6.6%
- Cyanobacteriales 5.3%
- Gemmatimonadales 5.2%
- Propionibacteriales 5.0%
- Subgroup 7 4.8%
- Myxococcales 4.7%
- everything else 59.7%
- Incertae Sedis 17.0%
- Gemmatimonadaceae 5.2%
- Nocardioidaceae 5.0%
- Nitrosomonadaceae 4.8%
- Chloroflexaceae 4.5%
- Myxococcaceae 4.0%
- Sphingomonadaceae 3.9%
- everything else 55.7%
- Incertae Sedis 44.7%
- Nocardioides 4.8%
- Ellin6067 3.7%
- Sphingomonas 3.6%
- Chloronema 3.5%
- Corallococcus 3.4%
- Phormidium IAM M-71 2.7%
- everything else 33.7%
- uncultured bacterium 65.4%
- Corallococcus exiguus 3.4%
- uncultured soil bacterium 2.5%
- uncultured Gemmatimonadetes bacterium 2.1%
- Marmoricola sp. 1.8%
- Persicaria minor 1.3%
- uncultured Acidobacteria bacterium 1.2%
- everything else 22.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 81% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 77% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 77% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.