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SAMN16294722
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
62,479
Reads
1,847
Observed features
6.949
Shannon
0.924
Evenness
1,847
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.42
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805501
Per-run QC
- 16S identity
- 96.8%
- Q30
- 47.8%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_5956 · Nocardioides 411 (0.7%)
- ASV_7067 · Corallococcus 1,458 (2.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 25.0%
- Actinomycetota 20.3%
- Chloroflexota 9.8%
- Acidobacteriota 8.6%
- Myxococcota 6.5%
- Bacteroidota 6.2%
- Gemmatimonadota 5.4%
- everything else 18.2%
- Alphaproteobacteria 15.1%
- Gammaproteobacteria 9.9%
- Actinobacteria 9.4%
- Thermoleophilia 6.7%
- Bacteroidia 6.2%
- Anaerolineae 5.0%
- Cyanobacteriia 4.6%
- everything else 43.0%
- Hyphomicrobiales 7.1%
- Burkholderiales 6.3%
- Incertae Sedis 5.7%
- Solirubrobacterales 4.4%
- Gemmatimonadales 4.0%
- Sphingomonadales 3.2%
- Chitinophagales 3.0%
- everything else 66.3%
- Incertae Sedis 16.1%
- Gemmatimonadaceae 4.0%
- Nitrosomonadaceae 3.3%
- Sphingomonadaceae 3.2%
- Myxococcaceae 2.8%
- Anaerolineaceae 2.8%
- 67-14 2.8%
- everything else 65.0%
- Incertae Sedis 45.0%
- Corallococcus 2.3%
- Sphingomonas 2.1%
- Bryobacter 2.1%
- Nocardioides 2.0%
- Subgroup 10 1.8%
- MND1 1.6%
- everything else 43.2%
- uncultured bacterium 64.9%
- Corallococcus exiguus 2.3%
- uncultured soil bacterium 2.2%
- uncultured Gemmatimonadetes bacterium 1.8%
- metagenome 1.6%
- uncultured Chloroflexi bacterium 1.3%
- uncultured Acidobacteria bacterium 1.1%
- everything else 24.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 82% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 81% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 80% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.